Non-Coding RNA Search

Ss1.1-Pig4-TMW8057J10.3

Sequence:


               
               CTTGGAGAAGCGCATAAGGAAACTCCAGAAGAAGGCCCTTCAGTTCCAGGGGCAAGTGGG
ACTGCCAAAGGGAAAGAGACACTTGGAGTATGACATGCGGCCCGAGGCAGAGGGAGCCTC
TGAGGGTGAAGAGTCGGAGTACTTGCCCTCGGAGGAGGAGCCACAGGAGGCGGCGGGGGC
CGACCTCTCCGAGGATGAACGGAGGCGGGTGCTCAGTCACCGGAAACGGCAGAAGAAAGT
CACAGTGCAGGACATTGATGATGACTTTTTTCCAAGTTCTGGGGAAGAAGCTGAAGGCAC
AGGAGGGGGTGGAGGAGGTCGGAAAGTAGCAAGATGCCGAGACGATGGAGATGAAGATTA
TTATAAACAGCGGTTAAGGAGATGGAATAAACTGAGGCTGCAGGACAAAGAGAAATGTTT
GAAGCTTGAAGACGATTCTGAGGAAAGCGATGCTGAATTTGATGAAGGTTTTAAAATGCC
GGGTTTTCTGTTCAAAAAGCTTTTTAAGTATGTGCCATGTGTTCTTCCGTGGCTGTGGGA
ATTGCACTGCCAGCAGGCAGGAGGAATTCTGGGAGACGAAATGGGATTGGGCAAGACCAT
CCAGATAATTGCCTTCTTGGCAGGTCTGAGCTACAGCAAGATCAGGACTCGTGGTTCAAA
TTACAGGTTCGAGGGATTGGGCCCAACTATAATCGTTTGTCCAACGACAGTGATGCATCA
GTGGGTGAAGGAATTTCACACGTGGTGGCCTCCATTCAGAGTGGCAATTCTGCACGAAAC
TGGTTCCTTTACCCACAAAAAGGAGAAACTAGTTCGAGATATTGCTTCATTGCCATGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGAGAAGCGCATAAGGAAACTCCAGAAGAAGGCCCTTCAGTTCCAGGGGCAAGTGGG
ACTGCCAAAGGGAAAGAGACACTTGGAGTATGACATGCGGCCCGAGGCAGAGGGAGCCTC
TGAGGGTGAAGAGTCGGAGTACTTGCCCTCGGAGGAGGAGCCACAGGAGGCGGCGGGGGC
CGACCTCTCCGAGGATGAACGGAGGCGGGTGCTCAGTCACCGGAAACGGCAGAAGAAAGT
CACAGTGCAGGACATTGATGATGACTTTTTTCCAAGTTCTGGGGAAGAAGCTGAAGGCAC
AGGAGGGGGTGGAGGAGGTCGGAAAGTAGCAAGATGCCGAGACGATGGAGATGAAGATTA
TTATAAACAGCGGTTAAGGAGATGGAATAAACTGAGGCTGCAGGACAAAGAGAAATGTTT
GAAGCTTGAAGACGATTCTGAGGAAAGCGATGCTGAATTTGATGAAGGTTTTAAAATGCC
GGGTTTTCTGTTCAAAAAGCTTTTTAAGTATGTGCCATGTGTTCTTCCGTGGCTGTGGGA
ATTGCACTGCCAGCAGGCAGGAGGAATTCTGGGAGACGAAATGGGATTGGGCAAGACCAT
CCAGATAATTGCCTTCTTGGCAGGTCTGAGCTACAGCAAGATCAGGACTCGTGGTTCAAA
TTACAGGTTCGAGGGATTGGGCCCAACTATAATCGTTTGTCCAACGACAGTGATGCATCA
GTGGGTGAAGGAATTTCACACGTGGTGGCCTCCATTCAGAGTGGCAATTCTGCACGAAAC
TGGTTCCTTTACCCACAAAAAGGAGAAACTAGTTCGAGATATTGCTTCATTGCCATGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-161, + strand, RNAz p=0.929369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, + strand, RNAz p=0.929369

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               42-113, BP997764 full-length enriched pig cDNA library, lymphocyte Sus 
(dbj|BP997764.1|), blast E-value=2e-31, identity=100% 
               

               
               42-160, CJ483942 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ483942.1|), blast E-value=2e-21, identity=86.55% 
               

               
               42-160, DKFZp781M2131_r1 781 (synonym (emb|BX644251.1|), blast E-value=5e-19, 
identity=85.71%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               42-113, BP997764 full-length enriched pig cDNA library, lymphocyte Sus 
(dbj|BP997764.1|), blast E-value=2e-31, identity=100% 
               

               
               42-160, CJ483942 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ483942.1|), blast E-value=2e-21, identity=86.55% 
               

               
               42-160, DKFZp781M2131_r1 781 (synonym (emb|BX644251.1|), blast E-value=5e-19, 
identity=85.71%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_170753, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_170753, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-379, gnl|bosTau2|chr28 (33861161-33860782)
               

               
               3-379, gnl|Hg17|chr10 (50402499-50402084)
               

               
               3-379, gnl|Mm7|chr14 (29958094-29958497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-379, gnl|bosTau2|chr28 (33861161-33860782)
               

               
               3-379, gnl|Hg17|chr10 (50402499-50402084)
               

               
               3-379, gnl|Mm7|chr14 (29958094-29958497)

	42-113, BP997764 full-length enriched pig cDNA library, lymphocyte Sus (dbj\|BP997764.1\|), blast E-value=2e-31, identity=100%
	42-160, CJ483942 macaque testis cDNA library QtsA Macaca fascicularis cDNA (dbj\|CJ483942.1\|), blast E-value=2e-21, identity=86.55%
	42-160, DKFZp781M2131_r1 781 (synonym (emb\|BX644251.1\|), blast E-value=5e-19, identity=85.71%

	3-379, gnl\|bosTau2\|chr28 (33861161-33860782)
	3-379, gnl\|Hg17\|chr10 (50402499-50402084)
	3-379, gnl\|Mm7\|chr14 (29958094-29958497)