Non-Coding RNA Search

Ss1.1-Pig4-TMW8057J24.3

Sequence:


               
               GAACAAGGACCTGCGACATTTTCTCAGTCAGCGATTCCAGAAAGGGTCGCCTGATCATGA
GCTCCAGCAGACCATAAGGGATAACCTTTACCGCCATGCTGTGCCTTGTAAGTAGTCAGT
TTGGGGCATCTTACTGCTGGGTAGGGGTGTGAAAAGTGGAGGGGAGAAAGAAGAGATCAA
CAGGTGATCCTGGAATGCTTGACAGCTTGCTCCCTTAGTGACTCCCTAAGTCCAGGGAGT
CATAATTGGCCATGGGACATACAATGCCATGCAGGGTGAATGGCTTGGCTTTCTAGTTCT
GGCTCTGCCACTTACTAGCTTGATAATGCCAGGCCAAGTGTTTATCCTTTATAAAGTCCA
GTTTTCACAGCTGTGGAAAGGACATCCTCAAGCTGACTCCAGAGAACTGTTAGGAAGTCA
ATGGGTGAGTGCATCTTGTGCAACATGGGTGTGGGATAAGCCTCCAGAAATGTTAACCAC
CATTGTCATTAATGGAATGGACCAGGCTAGAGGCCTTCAGACTGATGCCCGAGGAGATCA
ATGGGTCTTCTTACCCACCTTTATCAGATTCATCAATCATGATTTCATGCATAATTTTGT
TTGAAGAACTGGCTTCCAGAGGTTGGAACCAAACCCCAAAGCCATTAGAGCACACCAAAT
ATGAAAAGCAAGACATAGAATGTTGGGAACCTCCATATGCCGCGGGAGCGGCCCAAGAAA
TAGCAACAACAACAACAACAACAAAAAAGACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAAGGACCTGCGACATTTTCTCAGTCAGCGATTCCAGAAAGGGTCGCCTGATCATGA
GCTCCAGCAGACCATAAGGGATAACCTTTACCGCCATGCTGTGCCTTGTAAGTAGTCAGT
TTGGGGCATCTTACTGCTGGGTAGGGGTGTGAAAAGTGGAGGGGAGAAAGAAGAGATCAA
CAGGTGATCCTGGAATGCTTGACAGCTTGCTCCCTTAGTGACTCCCTAAGTCCAGGGAGT
CATAATTGGCCATGGGACATACAATGCCATGCAGGGTGAATGGCTTGGCTTTCTAGTTCT
GGCTCTGCCACTTACTAGCTTGATAATGCCAGGCCAAGTGTTTATCCTTTATAAAGTCCA
GTTTTCACAGCTGTGGAAAGGACATCCTCAAGCTGACTCCAGAGAACTGTTAGGAAGTCA
ATGGGTGAGTGCATCTTGTGCAACATGGGTGTGGGATAAGCCTCCAGAAATGTTAACCAC
CATTGTCATTAATGGAATGGACCAGGCTAGAGGCCTTCAGACTGATGCCCGAGGAGATCA
ATGGGTCTTCTTACCCACCTTTATCAGATTCATCAATCATGATTTCATGCATAATTTTGT
TTGAAGAACTGGCTTCCAGAGGTTGGAACCAAACCCCAAAGCCATTAGAGCACACCAAAT
ATGAAAAGCAAGACATAGAATGTTGGGAACCTCCATATGCCGCGGGAGCGGCCCAAGAAA
TAGCAACAACAACAACAACAACAAAAAAGACAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NP44_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NP44_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               141-248, - strand, RNAz p=0.796917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-248, - strand, RNAz p=0.796917

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-248, gnl|bosTau2|chr22 (26651942-26651702)
               

               
               1-248, gnl|Hg17|chr3 (65582793-65582553)
               


               
               315-548, gnl|bosTau2|chr22 (26651501-26651254)
               

               
               315-548, gnl|Hg17|chr3 (65582501-65582267)
               

               
               315-548, gnl|Mm7|chr6 (94031105-94030879)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr22 (26651942-26651702)
               

               
               1-248, gnl|Hg17|chr3 (65582793-65582553)
               


               
               315-548, gnl|bosTau2|chr22 (26651501-26651254)
               

               
               315-548, gnl|Hg17|chr3 (65582501-65582267)
               

               
               315-548, gnl|Mm7|chr6 (94031105-94030879)

	1-248, gnl\|bosTau2\|chr22 (26651942-26651702)
	1-248, gnl\|Hg17\|chr3 (65582793-65582553)

	315-548, gnl\|bosTau2\|chr22 (26651501-26651254)
	315-548, gnl\|Hg17\|chr3 (65582501-65582267)
	315-548, gnl\|Mm7\|chr6 (94031105-94030879)