Non-Coding RNA Search

Ss1.1-Pig4-TMW8057L02.5

Sequence:


               
               GACAGGATCCTGAGGGTATACAGCACTCAGAAGAAACGTGTGGCTTTTAATGTGTCAAAG
ATGCTGTCTGGAGTAGGGGCCGAAGGAGAGGCAAGAAGTTACCGGATGTTCCATGATGAC
AGCATGAAGTCCTTCTTCCGCAGACTTAGTTTCACTCCGGATGGATCTTTGCTCCTCACG
CCAGCTGGATGTGTGGAATCTGGTGAAAATGTAACGAATACAACTTATGTTTTCTCCAGG
AAAAATCTGAAAAGGCCCATCGCCCACCTCCCATGTCCCGGGAAGGCGACCCTCGCTGTC
CGCTGCTGCCCCGTCTACTTTGCGCTGAGGCCGGCGGTGGAAGCAGAGCCCAGCGTGGAG
CTGGTGAGCCTGCCGTACCGCTTGGTGTTTGCTGTGGCTTCCGAAGACTCCGTGCTTCTG
TATGACACCCAGCAGCTGTTCCCGTTTGGCTATGTGTCTAACATACATTACCACACCCTG
AGCGACATTTCCTGGTCCAGCGACGGGGCCTTCCTGGCCATTTCCTCCACGGATGGTTAC
TGTTCCTTCGTGACGTTTGAGAAGGATGAGCTTGGAATACCCTTGAAAGAGAAACCGGTT
CTGAGCGTGAGAACGCCTGATACAGCGAAGAAAACCAAGAGTCAGACCCAGTCTTTGCCA
GGCCCCAGGCTGGTAGAAGGGACACCCACCAGCAGGGCCCAGGACCCCAGCAGCCCCTCT
GCAACCCCCCCTCCAGGGAAGCAGTCTCTGGCCCCTGCAGCAGCCAAGGACACCCCTGCG
GCCACCCCTGCCGCCAGAGGCTTCTGGGCAGCACCCTCAGAGGAGAAGACCTGCAGGCCA
GCAGTCAGAACGTGAAAGGCCACCCGCCCCGGAGGGTCACTCTGAACACGCTGCAGGCCT
GGAGCAAGTCAACACCCCGGAGAATAAACTTAATACCCTAAAGACAGAAAGCCGCCGAAT
TCTTGGCCTCGAGGGCAAATTCCTATAGTGAGTGTA------------ATGTATANTGTT
TCTGTGTGAATGNTATCGCTCAAATTCAAAAACATAGAGCGGAGCATAAGTGTAAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGATCCTGAGGGTATACAGCACTCAGAAGAAACGTGTGGCTTTTAATGTGTCAAAG
ATGCTGTCTGGAGTAGGGGCCGAAGGAGAGGCAAGAAGTTACCGGATGTTCCATGATGAC
AGCATGAAGTCCTTCTTCCGCAGACTTAGTTTCACTCCGGATGGATCTTTGCTCCTCACG
CCAGCTGGATGTGTGGAATCTGGTGAAAATGTAACGAATACAACTTATGTTTTCTCCAGG
AAAAATCTGAAAAGGCCCATCGCCCACCTCCCATGTCCCGGGAAGGCGACCCTCGCTGTC
CGCTGCTGCCCCGTCTACTTTGCGCTGAGGCCGGCGGTGGAAGCAGAGCCCAGCGTGGAG
CTGGTGAGCCTGCCGTACCGCTTGGTGTTTGCTGTGGCTTCCGAAGACTCCGTGCTTCTG
TATGACACCCAGCAGCTGTTCCCGTTTGGCTATGTGTCTAACATACATTACCACACCCTG
AGCGACATTTCCTGGTCCAGCGACGGGGCCTTCCTGGCCATTTCCTCCACGGATGGTTAC
TGTTCCTTCGTGACGTTTGAGAAGGATGAGCTTGGAATACCCTTGAAAGAGAAACCGGTT
CTGAGCGTGAGAACGCCTGATACAGCGAAGAAAACCAAGAGTCAGACCCAGTCTTTGCCA
GGCCCCAGGCTGGTAGAAGGGACACCCACCAGCAGGGCCCAGGACCCCAGCAGCCCCTCT
GCAACCCCCCCTCCAGGGAAGCAGTCTCTGGCCCCTGCAGCAGCCAAGGACACCCCTGCG
GCCACCCCTGCCGCCAGAGGCTTCTGGGCAGCACCCTCAGAGGAGAAGACCTGCAGGCCA
GCAGTCAGAACGTGAAAGGCCACCCGCCCCGGAGGGTCACTCTGAACACGCTGCAGGCCT
GGAGCAAGTCAACACCCCGGAGAATAAACTTAATACCCTAAAGACAGAAAGCCGCCGAAT
TCTTGGCCTCGAGGGCAAATTCCTATAGTGAGTGTA------------ATGTATANTGTT
TCTGTGTGAATGNTATCGCTCAAATTCAAAAACATAGAGCGGAGCATAAGTGTAAGCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61873850|ref|XP_589034.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873850|ref|XP_589034.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               687-845, - strand, RNAz p=0.932358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               687-845, - strand, RNAz p=0.932358

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               494-920, gnl|bosTau2|chr1 (96393249-96393682)
               

               
               494-920, gnl|Hg17|chr21 (36707051-36707484)
               

               
               494-920, gnl|Mm7|chr16 (93967085-93967518)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               494-920, gnl|bosTau2|chr1 (96393249-96393682)
               

               
               494-920, gnl|Hg17|chr21 (36707051-36707484)
               

               
               494-920, gnl|Mm7|chr16 (93967085-93967518)

	494-920, gnl\|bosTau2\|chr1 (96393249-96393682)
	494-920, gnl\|Hg17\|chr21 (36707051-36707484)
	494-920, gnl\|Mm7\|chr16 (93967085-93967518)