Non-Coding RNA Search

Ss1.1-Pig4-TMW8057L19.5

Sequence:


               
               GCCTGATGAGTTCCTACAAGTGAAAAATGTGCTGAAGGATGGTCCTGCAGCTCAGGATGG
GAAGATTGCACCAGGTGATGTTATTGTCGACATCAATGGCAACTGTGTCCTTGGTCACAC
CCATGCAGATGTTGTCCAGATGTTTCAGTTGGTACCCGTCAATCAGTATGTCAACCTCAC
TTTATGTCGTGGTTATCCACTTCCTGATGACAATGAAGATCCGGTCGTGGACATTGTTGC
TGCTACTCCTGTCATCAATGGACAGCCGTTAACGAAGGGAGAGACTTGCATGAGTACTCA
GGAGTTTAAGTCAGGAGCCGTGATTCTGGACCAGAATGGCAAATCGGGACACACCTTGAT
CAGTGATCGTCTCAATGGACCGGTAGATCTGAGTGAGCAGAGAGCATCTATGGCATCATC
AGGCAGCTCCCAGCCTGAACTAGTGACTATCCCTCTGATTAAGGGCCCTAAAGGCTTTGG
GTTTGCAATTGCTGACAGCCCCACTGGACAGAAGGTGAAAATGATACTGGATAGCCAGTG
GTGTCAAGGCCTACAGAAAGGGGATATAATTAAGGAAATTTACCATCAAAATGTGCAGAA
TTTAACACATCTCCAAGTGGTAGAGGTGCTAAAGCAGTTTCCAGTAGGTGCAGATGTACC
ATTGCTTATCTTAAGAGGAGGTCCTCCATCACCAACTAAAACTGCCAAAATGAAAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGATGAGTTCCTACAAGTGAAAAATGTGCTGAAGGATGGTCCTGCAGCTCAGGATGG
GAAGATTGCACCAGGTGATGTTATTGTCGACATCAATGGCAACTGTGTCCTTGGTCACAC
CCATGCAGATGTTGTCCAGATGTTTCAGTTGGTACCCGTCAATCAGTATGTCAACCTCAC
TTTATGTCGTGGTTATCCACTTCCTGATGACAATGAAGATCCGGTCGTGGACATTGTTGC
TGCTACTCCTGTCATCAATGGACAGCCGTTAACGAAGGGAGAGACTTGCATGAGTACTCA
GGAGTTTAAGTCAGGAGCCGTGATTCTGGACCAGAATGGCAAATCGGGACACACCTTGAT
CAGTGATCGTCTCAATGGACCGGTAGATCTGAGTGAGCAGAGAGCATCTATGGCATCATC
AGGCAGCTCCCAGCCTGAACTAGTGACTATCCCTCTGATTAAGGGCCCTAAAGGCTTTGG
GTTTGCAATTGCTGACAGCCCCACTGGACAGAAGGTGAAAATGATACTGGATAGCCAGTG
GTGTCAAGGCCTACAGAAAGGGGATATAATTAAGGAAATTTACCATCAAAATGTGCAGAA
TTTAACACATCTCCAAGTGGTAGAGGTGCTAAAGCAGTTTCCAGTAGGTGCAGATGTACC
ATTGCTTATCTTAAGAGGAGGTCCTCCATCACCAACTAAAACTGCCAAAATGAAAACAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               189-308, + strand, RNAz p=0.783394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-308, + strand, RNAz p=0.783394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               70-682, gnl|bosTau2|chr3 (24653223-24652611)
               

               
               70-682, gnl|Hg17|chr1 (113896570-113897182)
               

               
               70-682, gnl|Mm7|chr3 (103845387-103844775)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-682, gnl|bosTau2|chr3 (24653223-24652611)
               

               
               70-682, gnl|Hg17|chr1 (113896570-113897182)
               

               
               70-682, gnl|Mm7|chr3 (103845387-103844775)

	70-682, gnl\|bosTau2\|chr3 (24653223-24652611)
	70-682, gnl\|Hg17\|chr1 (113896570-113897182)
	70-682, gnl\|Mm7\|chr3 (103845387-103844775)