Non-Coding RNA Search

Ss1.1-Pig4-TMW8058A13.5

Sequence:


               
               GGAAAAGCAGAGTGACAAACCCCAGTCCACTCCCCCTGAGTCATGTGCTTCTGACCCAAG
CAAGACTCCACCCCAGGAGACTTTGTCCCAAGAAAGCAGTGTTGAGGAAAAGACTCCAGC
CAAAGCGACTGTGCTCCCAGACCTTCTCCCTCCCTCACAGCCAGCCCCCTCAGATGAGGA
GCCTCAAGCCAGATTCAAGGTGCATTCCATCATAGAGAGTGACCCAGTGACCCCGCCCAG
TGACTCAAGCATGCCCACACCCCCCATTCCTTCTGTCACTATAGCAAAACTCCCAGCCCC
TGTCACTACTGCGGGGATCCCACACCAGAGCCCCCCAGCCAAGGTGACAGAGTGGATCAC
GAGGCAGGAGGAGCCTCGGGCACAGTCCACGCCGTCTCCGGCCCTTCCCCCAGACACAAA
GGCCTCTGACATAGACACCAGCTCCAGTACACTGCGGAAGATCCTCATGGACCCGAAATA
CGTATCTGCCACGGGTGTCACTTCCACAAGTGTCACAACGGCCATTGCAGAGCCTGTCAG
TGCCACCCCTTGCCTGCATGAGGCATTGCCCCCTCCAATTGAATCCAAAAAGCCTCTTTT
AGAAGAAAAACCGGCAGCTCCAGTAACTAACACCACTGACACACAGGCCTCAGAGGTTCC
AGTGGCCACAGACAAAGAAAAGGTGACTCCAGTCATTGCTCCCAAAATTACTTCTGTTAT
TAGCCGGATGCCTGTCAGCATTGATTTGGAAAATTCCCAAAAGATAACTCTGGCCAAACC
AGCTCCTCAAACCCTGACTGGCCTGGTGAGCGCCCTGACCGGCCTGGTGAATGTCTCCTT
GGTCCCAGTGAATGCTCTGACTGGCCCGGTGACCGCCCTGAAAGGCCCCGGGAAGGGCCC
AGTGGCCACGCTGAAGGGCTTGGTGAACACTCCTGCTGGCCCCGTGAATGTCCTGAAGGG
ACCCGTAAACGTTCTCACAGGCCCTGTGAACGTTCTCACCACTCCAGTGAACGCCACCGT
GGGCACAGTGAGCGCTGCCACCGGCGTGGTGAGTGCCACCCCAGGCACAGTGACAGTCAC
GGCAGGCGCCGTGACTGCTGCCTCTGGGGCTGTGACTGCCGCAACAACAGGTGCTGTGAC
TGTGGCAGGTGCAGTGATCGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGCAGAGTGACAAACCCCAGTCCACTCCCCCTGAGTCATGTGCTTCTGACCCAAG
CAAGACTCCACCCCAGGAGACTTTGTCCCAAGAAAGCAGTGTTGAGGAAAAGACTCCAGC
CAAAGCGACTGTGCTCCCAGACCTTCTCCCTCCCTCACAGCCAGCCCCCTCAGATGAGGA
GCCTCAAGCCAGATTCAAGGTGCATTCCATCATAGAGAGTGACCCAGTGACCCCGCCCAG
TGACTCAAGCATGCCCACACCCCCCATTCCTTCTGTCACTATAGCAAAACTCCCAGCCCC
TGTCACTACTGCGGGGATCCCACACCAGAGCCCCCCAGCCAAGGTGACAGAGTGGATCAC
GAGGCAGGAGGAGCCTCGGGCACAGTCCACGCCGTCTCCGGCCCTTCCCCCAGACACAAA
GGCCTCTGACATAGACACCAGCTCCAGTACACTGCGGAAGATCCTCATGGACCCGAAATA
CGTATCTGCCACGGGTGTCACTTCCACAAGTGTCACAACGGCCATTGCAGAGCCTGTCAG
TGCCACCCCTTGCCTGCATGAGGCATTGCCCCCTCCAATTGAATCCAAAAAGCCTCTTTT
AGAAGAAAAACCGGCAGCTCCAGTAACTAACACCACTGACACACAGGCCTCAGAGGTTCC
AGTGGCCACAGACAAAGAAAAGGTGACTCCAGTCATTGCTCCCAAAATTACTTCTGTTAT
TAGCCGGATGCCTGTCAGCATTGATTTGGAAAATTCCCAAAAGATAACTCTGGCCAAACC
AGCTCCTCAAACCCTGACTGGCCTGGTGAGCGCCCTGACCGGCCTGGTGAATGTCTCCTT
GGTCCCAGTGAATGCTCTGACTGGCCCGGTGACCGCCCTGAAAGGCCCCGGGAAGGGCCC
AGTGGCCACGCTGAAGGGCTTGGTGAACACTCCTGCTGGCCCCGTGAATGTCCTGAAGGG
ACCCGTAAACGTTCTCACAGGCCCTGTGAACGTTCTCACCACTCCAGTGAACGCCACCGT
GGGCACAGTGAGCGCTGCCACCGGCGTGGTGAGTGCCACCCCAGGCACAGTGACAGTCAC
GGCAGGCGCCGTGACTGCTGCCTCTGGGGCTGTGACTGCCGCAACAACAGGTGCTGTGAC
TGTGGCAGGTGCAGTGATCGCACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               241-440, - strand, RNAz p=0.967847
               

               
               881-1040, - strand, RNAz p=0.983789

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-440, - strand, RNAz p=0.967847
               

               
               881-1040, - strand, RNAz p=0.983789

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1018-1086, - strand, RNAmicro p=0.93919

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1018-1086, - strand, RNAmicro p=0.93919

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1122, gnl|bosTau2|chr16 (36854920-36856040)
               

               
               2-1122, gnl|Hg17|chr1 (16005191-16006287)
               

               
               2-1122, gnl|Mm7|chr4 (140852612-140851585)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1122, gnl|bosTau2|chr16 (36854920-36856040)
               

               
               2-1122, gnl|Hg17|chr1 (16005191-16006287)
               

               
               2-1122, gnl|Mm7|chr4 (140852612-140851585)

	241-440, - strand, RNAz p=0.967847
	881-1040, - strand, RNAz p=0.983789

	2-1122, gnl\|bosTau2\|chr16 (36854920-36856040)
	2-1122, gnl\|Hg17\|chr1 (16005191-16006287)
	2-1122, gnl\|Mm7\|chr4 (140852612-140851585)