Non-Coding RNA Search

Ss1.1-Pig4-TMW8058B09.3

Sequence:


               
               GGAGAAAGAAAAAAAAGCAAAACGTCTAAATTATCAGTGGTTTCTCTCTGTCCTGTTAAC
ATGGTTCTATATTCTTACCTGCCTTTATCCTTTATGCCGCAGCACACCCACTGAGCCAGC
ACCACCACCCTCTGGCAGGATTTCTGAGATCCCACTATCCTACAGGGCCATGCCCTCCTG
GGGCTGTCCATGTGTTCCATCTTTATCAGGTGGAAATGTGAAATGGCCCCTCGGTGGCCC
TGAAAGACATGTGCTCTTAGATGGCTCCCATCCCACTGCTCACAACATTTTAATTTCTAA
TTTTAGTGGCACCTCAGGATTTCTTTGAGATTTCACAAAGCCCAGGTCTCTTGAACTCTC
TTCCTTGAATGGGAAGAGAAGAACGACCCACTGATGGCTGAGCACAAGGTGTTAGCGGGG
AGAGAAGTCCAGCATGAGAGCATGGGGGTGGGGGTGGATCGGGGAGCCAGGGAGGGAGGT
CAGAGCTGCTGGGCGGCTCTCACTCTGAAAGCAGCTGGATGCTCTGCTTTCTTTGAGGAC
TGCTATCCCATTGGGCAATTTACAGAGTGTTTCCTTTCACCCAGTCAAGATTCAAGCAAG
AGGAACCAAATTCTATCGCACTAAATGCATGCAGGCAGTTGGTGAAGTCATACTTGAAAA
TCTGCGCATATTTCTTTGTGTGTACTCAAGGGTAGGCTTTCAGGGCATGGGAAGGAATAT
TTTGATGGAAACGGGCATTTTCTCCCCCAAGCAAGTAGTCTCCCCTAATCAAAACCATCT
ACCAAGATTGTATGTAGATTTAAATCTCTTTTTTCTTTGTGGGTTGCCAGCAGCATGAGG
------------------------------------------------------------
------------------------------------------------TTTTATTGGAAC
TTGCTCATTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAAGAAAAAAAAGCAAAACGTCTAAATTATCAGTGGTTTCTCTCTGTCCTGTTAAC
ATGGTTCTATATTCTTACCTGCCTTTATCCTTTATGCCGCAGCACACCCACTGAGCCAGC
ACCACCACCCTCTGGCAGGATTTCTGAGATCCCACTATCCTACAGGGCCATGCCCTCCTG
GGGCTGTCCATGTGTTCCATCTTTATCAGGTGGAAATGTGAAATGGCCCCTCGGTGGCCC
TGAAAGACATGTGCTCTTAGATGGCTCCCATCCCACTGCTCACAACATTTTAATTTCTAA
TTTTAGTGGCACCTCAGGATTTCTTTGAGATTTCACAAAGCCCAGGTCTCTTGAACTCTC
TTCCTTGAATGGGAAGAGAAGAACGACCCACTGATGGCTGAGCACAAGGTGTTAGCGGGG
AGAGAAGTCCAGCATGAGAGCATGGGGGTGGGGGTGGATCGGGGAGCCAGGGAGGGAGGT
CAGAGCTGCTGGGCGGCTCTCACTCTGAAAGCAGCTGGATGCTCTGCTTTCTTTGAGGAC
TGCTATCCCATTGGGCAATTTACAGAGTGTTTCCTTTCACCCAGTCAAGATTCAAGCAAG
AGGAACCAAATTCTATCGCACTAAATGCATGCAGGCAGTTGGTGAAGTCATACTTGAAAA
TCTGCGCATATTTCTTTGTGTGTACTCAAGGGTAGGCTTTCAGGGCATGGGAAGGAATAT
TTTGATGGAAACGGGCATTTTCTCCCCCAAGCAAGTAGTCTCCCCTAATCAAAACCATCT
ACCAAGATTGTATGTAGATTTAAATCTCTTTTTTCTTTGTGGGTTGCCAGCAGCATGAGG
------------------------------------------------------------
------------------------------------------------TTTTATTGGAAC
TTGCTCATTACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               142-259, - strand, RNAz p=0.733623
               

               
               337-454, + strand, RNAz p=0.996898

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-259, - strand, RNAz p=0.733623
               

               
               337-454, + strand, RNAz p=0.996898

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               25-807, gnl|bosTau2|chr18 (33006483-33007277)
               

               
               25-807, gnl|Hg17|chr16 (69972018-69972779)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-807, gnl|bosTau2|chr18 (33006483-33007277)
               

               
               25-807, gnl|Hg17|chr16 (69972018-69972779)

	142-259, - strand, RNAz p=0.733623
	337-454, + strand, RNAz p=0.996898

	25-807, gnl\|bosTau2\|chr18 (33006483-33007277)
	25-807, gnl\|Hg17\|chr16 (69972018-69972779)