Non-Coding RNA Search

Ss1.1-Pig4-TMW8058C04.5

Sequence:


               
               GCTGCTGGCCTGCACCACAGCCACAGCAACACCAGATCTGGGTCACATCCACAACTTAGA
GGCACTGCCAGATCCTTTAACTCACTGAGCAAGGCCAGGGATCGAACCTGAATCCTCATG
GTTCCTAGTCGGATTCGTTAACCACTGCGCCACAACGGGAACTCCCCGAATTTTATTTTT
TAATGAGAGTTGCAACATTTATTTCAGGCTATCTCTCTCTCTCTTTTTTCCTCTTTTTTC
TTTTTTGTCATACCTGCGGCATGTGGAAGTTCCTGGGCCAGGGATCGAACCTGCGCCATA
ACAGTGACCGGAACCATAGCAGTGAAAACGCAGGAGCCTTAACTGGCTAGGCCATCAGAG
AACTCTCAAGATTTCTTTGACTTTAAAGCCTATATCCTCATTCTCACACCATGCTGCCTC
TCTTAGGGGTCTAGCTAACCATTTTTCTAAATAGAGGTTTTTGTCATGCCCCAAATCAGT
GGGATTGGTAAAGCCAGATTAAACAAACAAAACTTTCTTAGAGCTGCATGCTGAGATGAA
ACAATGAGCTCTTTTCCTAAGCTCATTACAGGTATTAAGTGTTTAGCAATTTAATTAGGA
CACATCTAGATTTCACTATAGTCTCTAGAATACAAATGTCTTTGAACTTGGCATTCCTGT
TTGATTTTGTGTGGCTTTGACCCCTTTATGGAGCTACCTGCAAGCCCCTTTAAATGATAT
GCTTCTTCTCTGTAATGGAGCATTTCCAGGCAGGCATTTTATTCATTTTCTTGACTTTAA
GGTAGGGAGAAGTTGGGGAGATTTTTCAGCTCCTAAGACTTCATAGGAAACAATGACCAG
GAATGTAAAACAAACAAACAAACAACAAAACAAAACAACCCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTGGCCTGCACCACAGCCACAGCAACACCAGATCTGGGTCACATCCACAACTTAGA
GGCACTGCCAGATCCTTTAACTCACTGAGCAAGGCCAGGGATCGAACCTGAATCCTCATG
GTTCCTAGTCGGATTCGTTAACCACTGCGCCACAACGGGAACTCCCCGAATTTTATTTTT
TAATGAGAGTTGCAACATTTATTTCAGGCTATCTCTCTCTCTCTTTTTTCCTCTTTTTTC
TTTTTTGTCATACCTGCGGCATGTGGAAGTTCCTGGGCCAGGGATCGAACCTGCGCCATA
ACAGTGACCGGAACCATAGCAGTGAAAACGCAGGAGCCTTAACTGGCTAGGCCATCAGAG
AACTCTCAAGATTTCTTTGACTTTAAAGCCTATATCCTCATTCTCACACCATGCTGCCTC
TCTTAGGGGTCTAGCTAACCATTTTTCTAAATAGAGGTTTTTGTCATGCCCCAAATCAGT
GGGATTGGTAAAGCCAGATTAAACAAACAAAACTTTCTTAGAGCTGCATGCTGAGATGAA
ACAATGAGCTCTTTTCCTAAGCTCATTACAGGTATTAAGTGTTTAGCAATTTAATTAGGA
CACATCTAGATTTCACTATAGTCTCTAGAATACAAATGTCTTTGAACTTGGCATTCCTGT
TTGATTTTGTGTGGCTTTGACCCCTTTATGGAGCTACCTGCAAGCCCCTTTAAATGATAT
GCTTCTTCTCTGTAATGGAGCATTTCCAGGCAGGCATTTTATTCATTTTCTTGACTTTAA
GGTAGGGAGAAGTTGGGGAGATTTTTCAGCTCCTAAGACTTCATAGGAAACAATGACCAG
GAATGTAAAACAAACAAACAAACAACAAAACAAAACAACCCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               722-862, - strand, RNAz p=0.698022

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               722-862, - strand, RNAz p=0.698022

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               370-862, gnl|bosTau2|chr6 (68298093-68298585)
               

               
               370-862, gnl|dasNov1|scaffold_203105 (2649-2148)
               

               
               370-862, gnl|echTel1|scaffold_25409 (1313-1807)
               

               
               370-862, gnl|hg17|chr4 (17073659-17074198)
               

               
               370-862, gnl|Hg17|chr4 (17074277-17073762)
               

               
               370-862, gnl|loxAfr1|scaffold_57208 (7766-8307)
               

               
               370-862, gnl|mm7|chr5 (44678307-44678800)
               

               
               370-862, gnl|monDom2|scaffold_10 (22288224-22287684)
               

               
               370-862, gnl|oryCun1|scaffold_87526 (2116-1602)
               

               
               370-862, gnl|panTro1|chr3 (17421657-17422196)
               

               
               370-862, gnl|rheMac2|chr5 (12212181-12212729)
               

               
               370-862, gnl|rn3|chr14 (70830258-70829750)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-862, gnl|bosTau2|chr6 (68298093-68298585)
               

               
               370-862, gnl|dasNov1|scaffold_203105 (2649-2148)
               

               
               370-862, gnl|echTel1|scaffold_25409 (1313-1807)
               

               
               370-862, gnl|hg17|chr4 (17073659-17074198)
               

               
               370-862, gnl|Hg17|chr4 (17074277-17073762)
               

               
               370-862, gnl|loxAfr1|scaffold_57208 (7766-8307)
               

               
               370-862, gnl|mm7|chr5 (44678307-44678800)
               

               
               370-862, gnl|monDom2|scaffold_10 (22288224-22287684)
               

               
               370-862, gnl|oryCun1|scaffold_87526 (2116-1602)
               

               
               370-862, gnl|panTro1|chr3 (17421657-17422196)
               

               
               370-862, gnl|rheMac2|chr5 (12212181-12212729)
               

               
               370-862, gnl|rn3|chr14 (70830258-70829750)

	370-862, gnl\|bosTau2\|chr6 (68298093-68298585)
	370-862, gnl\|dasNov1\|scaffold_203105 (2649-2148)
	370-862, gnl\|echTel1\|scaffold_25409 (1313-1807)
	370-862, gnl\|hg17\|chr4 (17073659-17074198)
	370-862, gnl\|Hg17\|chr4 (17074277-17073762)
	370-862, gnl\|loxAfr1\|scaffold_57208 (7766-8307)
	370-862, gnl\|mm7\|chr5 (44678307-44678800)
	370-862, gnl\|monDom2\|scaffold_10 (22288224-22287684)
	370-862, gnl\|oryCun1\|scaffold_87526 (2116-1602)
	370-862, gnl\|panTro1\|chr3 (17421657-17422196)
	370-862, gnl\|rheMac2\|chr5 (12212181-12212729)
	370-862, gnl\|rn3\|chr14 (70830258-70829750)