Ss1.1-Pig4-TMW8058C19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACACCTGGCTTTGTTGGTCATGGAGACCTTGACAGTGCTTCTTCAAGGGTCAAACACA AATGCAGGAATCTTTCGAGAATTTGGAGGTGCAAGGTGTGCCCATAATATAGTGAGGTAC CCGCAGTGTCGGCAGCACGCCCTGATGATTATCCAGCAGCTGGTGCTCTCTCCCAACGGG GACGATGACATGGGCACTCTCCTGGGGCTGATGCATTCAGCGCCCCCCACAGAGTTACAG CTGAAGACTGACATTCTAAGAGCCCTCTTGTCCGTCCTTCGAGAAAGCCATCGTTCAAGA ACAGTCTTTAGGAAGGTCGGAGGGTTTGTGTACATCACGTCCTTGCTCGTTGCCATGGAG CGGTCCTTGAGCTCGCCGCCCAAGAACGGCTGGGAGAAAGTGAACCAGCACCAAGTGTTT GAACTGCTGCACACGGTGTTCTGCACACTGACGGCAGCCATGCGCTATGAGCCCGCCAAC TCCCATTTCTTCAAGACGGAGATTCAGTATGAGAAGCTGGCAGATGCCGTTCGATTTCTT GGCTGCTTCTCAGACCTGAGAAAAATAAGCCCCGTGAATGTCTTCCCCTCAAATACGCAG CCGTTTCAAAGACTTCTGGAGGAAGACGCGGTCCTGGTGGACGCCGTGTCGCCCACTTTG CGGCACTGCAGCAAACTCTTTATTTATCTCTACAAAGTGGCCACCGATTCTTTTGACAGA CATGCATATCATTCGGTTTCGACTCCCCCCTCCCCCCCTCCTAAAAATGTTGCTGACCTG AAACTGCATGTGGCAGCTTCATCTCTCCAGAGTTCTGATGCCGTCATCATCCATCCAGGA GCCATGCTTGCTATGCTGGACCTCCTGGCCTCTGTTGGGTCAGTGACACAGCCAGAACAT GCTTTGGACCTTCAACTTGCCGTGGCCAATATTTTACAATCACTGGTGCACACAGAAAGA AACCAGCAAGTCATGTGTGAAGCTGGCCTCCATGCACGACTGCTGCAGCGGTGCAGCGCC GCCCTGGCTGACGAGGACCACGCGCTGCACCCGCCCCTCCAGCGGATGTTCGAGCGACTG GCCTCCCAGGCCCTGGAGCCCATGGTGCTGAGGGAGTTTTTACGTTTGGCCAGTCCATTA AATTGTGGTGCCTGGGACAAAAAACTACTAAAACAATATAGGGTCCACAAACCAAGTTCA CTGAGTTATGAGCCAGAGATGCGAAGTAGTATGATCACATCCATGGAAGGTCTGGGTTCT GATAATGTCTTCAGCTTACATGAAGATAACCATTACCGGATAAGCAAGAGCCTAGTGAAA TCAGCAGAAGGAAGTACGGTACCCCTAACCAGGGTGAAGTGTCTGGTCTCCATGACAACC CCGCATGACATCAGACTTCACGGGTCATCAGTTACGCCAGCCTTTGTTGAATTTGACACG TCCCTTGAAGGGTTTGGATGCCTGTTCCTGCCCAGTCTGGCCCCTCACAATGCCCCCACA AACAACGCTGTCACCACAGGTCTTACTGATGGAGCCGTGGTCAGCGGCATTGGTTCCGGT GAACGATTCTTCCCCCCTCCGTCGGGCTTAAGCTACTCGAGCTGGTTCTGCATTGAACAC TTTAGTTCTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACACCTGGCTTTGTTGGTCATGGAGACCTTGACAGTGCTTCTTCAAGGGTCAAACACA AATGCAGGAATCTTTCGAGAATTTGGAGGTGCAAGGTGTGCCCATAATATAGTGAGGTAC CCGCAGTGTCGGCAGCACGCCCTGATGATTATCCAGCAGCTGGTGCTCTCTCCCAACGGG GACGATGACATGGGCACTCTCCTGGGGCTGATGCATTCAGCGCCCCCCACAGAGTTACAG CTGAAGACTGACATTCTAAGAGCCCTCTTGTCCGTCCTTCGAGAAAGCCATCGTTCAAGA ACAGTCTTTAGGAAGGTCGGAGGGTTTGTGTACATCACGTCCTTGCTCGTTGCCATGGAG CGGTCCTTGAGCTCGCCGCCCAAGAACGGCTGGGAGAAAGTGAACCAGCACCAAGTGTTT GAACTGCTGCACACGGTGTTCTGCACACTGACGGCAGCCATGCGCTATGAGCCCGCCAAC TCCCATTTCTTCAAGACGGAGATTCAGTATGAGAAGCTGGCAGATGCCGTTCGATTTCTT GGCTGCTTCTCAGACCTGAGAAAAATAAGCCCCGTGAATGTCTTCCCCTCAAATACGCAG CCGTTTCAAAGACTTCTGGAGGAAGACGCGGTCCTGGTGGACGCCGTGTCGCCCACTTTG CGGCACTGCAGCAAACTCTTTATTTATCTCTACAAAGTGGCCACCGATTCTTTTGACAGA CATGCATATCATTCGGTTTCGACTCCCCCCTCCCCCCCTCCTAAAAATGTTGCTGACCTG AAACTGCATGTGGCAGCTTCATCTCTCCAGAGTTCTGATGCCGTCATCATCCATCCAGGA GCCATGCTTGCTATGCTGGACCTCCTGGCCTCTGTTGGGTCAGTGACACAGCCAGAACAT GCTTTGGACCTTCAACTTGCCGTGGCCAATATTTTACAATCACTGGTGCACACAGAAAGA AACCAGCAAGTCATGTGTGAAGCTGGCCTCCATGCACGACTGCTGCAGCGGTGCAGCGCC GCCCTGGCTGACGAGGACCACGCGCTGCACCCGCCCCTCCAGCGGATGTTCGAGCGACTG GCCTCCCAGGCCCTGGAGCCCATGGTGCTGAGGGAGTTTTTACGTTTGGCCAGTCCATTA AATTGTGGTGCCTGGGACAAAAAACTACTAAAACAATATAGGGTCCACAAACCAAGTTCA CTGAGTTATGAGCCAGAGATGCGAAGTAGTATGATCACATCCATGGAAGGTCTGGGTTCT GATAATGTCTTCAGCTTACATGAAGATAACCATTACCGGATAAGCAAGAGCCTAGTGAAA TCAGCAGAAGGAAGTACGGTACCCCTAACCAGGGTGAAGTGTCTGGTCTCCATGACAACC CCGCATGACATCAGACTTCACGGGTCATCAGTTACGCCAGCCTTTGTTGAATTTGACACG TCCCTTGAAGGGTTTGGATGCCTGTTCCTGCCCAGTCTGGCCCCTCACAATGCCCCCACA AACAACGCTGTCACCACAGGTCTTACTGATGGAGCCGTGGTCAGCGGCATTGGTTCCGGT GAACGATTCTTCCCCCCTCCGTCGGGCTTAAGCTACTCGAGCTGGTTCTGCATTGAACAC TTTAGTTCTCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 421-580, + strand, RNAz p=0.661725 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 421-580, + strand, RNAz p=0.661725 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF538685, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 262-719, gnl|bosTau2|chr6 (57862313-57862770) | |
| 262-719, gnl|Hg17|chr4 (86088676-86088219) | |
| 262-719, gnl|Mm7|chr5 (101126099-101125642) | |
| 898-1113, gnl|bosTau2|chr6 (57873999-57874214) | |
| 898-1113, gnl|Hg17|chr4 (86080196-86079981) | |
| 898-1113, gnl|Mm7|chr5 (101118455-101118240) | |
| 1228-1457, gnl|bosTau2|chr6 (57879024-57879253) | |
| 1228-1457, gnl|canFam2|chr32 (11508747-11509011) | |
| 1228-1457, gnl|danRer3|chr5 (35400826-35400580) | |
| 1228-1457, gnl|dasNov1|scaffold_1533 (131164-131428) | |
| 1228-1457, gnl|echTel1|scaffold_314967 (40417-40679) | |
| 1228-1457, gnl|fr1|chrUn (245428817-245428559) | |
| 1228-1457, gnl|galGal2|chr4 (47502519-47502272) | |
| 1228-1457, gnl|hg17|chr4 (86074836-86075099) | |
| 1228-1457, gnl|Hg17|chr4 (86075082-86074853) | |
| 1228-1457, gnl|loxAfr1|scaffold_150198 (388-123) | |
| 1228-1457, gnl|mm7|chr5 (101112199-101112459) | |
| 1228-1457, gnl|Mm7|chr5 (101112445-101112216) | |
| 1228-1457, gnl|monDom2|scaffold_37 (18835036-18835293) | |
| 1228-1457, gnl|oryCun1|scaffold_208217 (79801-80065) | |
| 1228-1457, gnl|panTro1|chr3 (47605676-47605413) | |
| 1228-1457, gnl|rheMac2|chr5 (44730974-44730711) | |
| 1228-1457, gnl|rn3|chr14 (8974890-8974626) | |
| 1228-1457, gnl|tetNig1|chr12 (3570960-3571226) | |
| 1228-1457, gnl|xenTro1|scaffold_304 (850048-850312) | |
| 1459-1560, gnl|bosTau2|chr6 (57880631-57880732) | |
| 1459-1560, gnl|Hg17|chr4 (86073310-86073209) | |
| 1459-1560, gnl|Mm7|chr5 (101111214-101111113) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 262-719, gnl|bosTau2|chr6 (57862313-57862770) | |
| 262-719, gnl|Hg17|chr4 (86088676-86088219) | |
| 262-719, gnl|Mm7|chr5 (101126099-101125642) | |
| 898-1113, gnl|bosTau2|chr6 (57873999-57874214) | |
| 898-1113, gnl|Hg17|chr4 (86080196-86079981) | |
| 898-1113, gnl|Mm7|chr5 (101118455-101118240) | |
| 1228-1457, gnl|bosTau2|chr6 (57879024-57879253) | |
| 1228-1457, gnl|canFam2|chr32 (11508747-11509011) | |
| 1228-1457, gnl|danRer3|chr5 (35400826-35400580) | |
| 1228-1457, gnl|dasNov1|scaffold_1533 (131164-131428) | |
| 1228-1457, gnl|echTel1|scaffold_314967 (40417-40679) | |
| 1228-1457, gnl|fr1|chrUn (245428817-245428559) | |
| 1228-1457, gnl|galGal2|chr4 (47502519-47502272) | |
| 1228-1457, gnl|hg17|chr4 (86074836-86075099) | |
| 1228-1457, gnl|Hg17|chr4 (86075082-86074853) | |
| 1228-1457, gnl|loxAfr1|scaffold_150198 (388-123) | |
| 1228-1457, gnl|mm7|chr5 (101112199-101112459) | |
| 1228-1457, gnl|Mm7|chr5 (101112445-101112216) | |
| 1228-1457, gnl|monDom2|scaffold_37 (18835036-18835293) | |
| 1228-1457, gnl|oryCun1|scaffold_208217 (79801-80065) | |
| 1228-1457, gnl|panTro1|chr3 (47605676-47605413) | |
| 1228-1457, gnl|rheMac2|chr5 (44730974-44730711) | |
| 1228-1457, gnl|rn3|chr14 (8974890-8974626) | |
| 1228-1457, gnl|tetNig1|chr12 (3570960-3571226) | |
| 1228-1457, gnl|xenTro1|scaffold_304 (850048-850312) | |
| 1459-1560, gnl|bosTau2|chr6 (57880631-57880732) | |
| 1459-1560, gnl|Hg17|chr4 (86073310-86073209) | |
| 1459-1560, gnl|Mm7|chr5 (101111214-101111113) |