Non-Coding RNA Search

Ss1.1-Pig4-TMW8058L09.3

Sequence:


               
               CTCCTGGGTATTTTCACTTAAATTCTTGTATCAGGGTCTACTTAGAGCAGAACCCAACAT
AAAGCAGATGGTTTAGAGAGGTGAAGTAACTTGCTCCGAGTTTCACAGCTAGAAAGTGGC
AGCACTAGGATTTGAACCTGGGGACATGAGAGGAATTCAGATAGTGCCTCCAAACCACTC
TAATTATACTGCTTCCAGACTTTCTCACATCTGTTCAAGCATCTGGAATACCTGGGGATG
CCTAAAATTCTGCCATTTGAGTTTCTGGCTCCAGGTATACTTATGGAAAAAGAAAATTCT
CCTTGGGAACTAGATTAGCCTATTAGCTAATATCAGCCATTCACATGTAGTATGAACTTA
CCACATTTTCTTCCTTAAGGTCCTTGAACAGAGGAGCAACTTTAACAGGGAAGAGAAAGG
AATATGATTTTGTAGAGAACGTGGGTGAGGAGCACCAACTTTTATGCTGCTGGAGGGATC
AGGAGGAGAAAGCAGACCCTCAGAAAGGCAGCTCAGAAGGTGATAAAAATGAGCACGTCC
TATCCACATTTAGTGGAGAGCCAGTTCTAGTCCTCTGCTCGCTGACATCCTTAGCTCGCA
GGGGTTTCTGAATGCCACAAGTTGCATAAGTGATTTTGGAAGGTGAAGAGGAGAAATAGG
GGAGCACAGCCCAAGACAAACCATTAAAAACATTTGTGACAATGTGACCACTGACAAAAC
CCACTATCTAATCTCTATTTCCAGCCAGTCTCGCTCAACCCAGTGACCAGAATTTTAAAA
GGATGCTACCTCCTCTTCTGCCATGGGCTTGAGGGGCCAGCCTTGTCCCTGTGATCAAAT
GCCTGCCAGGCTTGGGAAGCCACCAGTGGGTGCTTGCCTGGAGTCTCTGTCTATCCTTAT
TTCTACAAAGAAGACTGATTTGCTTTGCCAGGGAAAGCTGTCCCCAGACTGCCCCAGCTG
CTGCTGCTCATCCTCAGGCATGTACTAGAAATAAACATTTCCCAAGCAATTTGCAGCTGG
GGGCAGAGGCCAAGTGGTGGTGGCTGGGGATGGGGAGATAGGTATGGTGGGTGTGGATGT
TTTAGTTGATATTTGGGTAATGAATACTTCTGTGAACATTTTTGTCTTTGCTGAGTATTA
GTGAGAAAAATGTGGGTGCAAGTGCTAGGCTTAGGGCCTCTTAAGAACTTCCCCCTCGGT
GAATGCCAAAAAATTAAGCAGAGGATTATTGCAAGGGAAATGGAGACAGCAGCTTCCTTG
GTGTTTGCAGAATTTCAAAACAGGCTCTGCAAATCACTGGTGGTCCTTGCAGTTTCTTTC
TTTCTTTCTTTCTTTTTTTTTTTTTGCAGTTTCTCATGGGGCTGTGCGGTAGGGAGTGTA
GTGGTTACACACATGGCCCTTGGGCTCAGAGAGACCTGGGTTAGAATTCCTGGCCCTTCA
TCAGAAGGGTGACTTGCAACTTACATTTCACCACCTATTGAATGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGGGTATTTTCACTTAAATTCTTGTATCAGGGTCTACTTAGAGCAGAACCCAACAT
AAAGCAGATGGTTTAGAGAGGTGAAGTAACTTGCTCCGAGTTTCACAGCTAGAAAGTGGC
AGCACTAGGATTTGAACCTGGGGACATGAGAGGAATTCAGATAGTGCCTCCAAACCACTC
TAATTATACTGCTTCCAGACTTTCTCACATCTGTTCAAGCATCTGGAATACCTGGGGATG
CCTAAAATTCTGCCATTTGAGTTTCTGGCTCCAGGTATACTTATGGAAAAAGAAAATTCT
CCTTGGGAACTAGATTAGCCTATTAGCTAATATCAGCCATTCACATGTAGTATGAACTTA
CCACATTTTCTTCCTTAAGGTCCTTGAACAGAGGAGCAACTTTAACAGGGAAGAGAAAGG
AATATGATTTTGTAGAGAACGTGGGTGAGGAGCACCAACTTTTATGCTGCTGGAGGGATC
AGGAGGAGAAAGCAGACCCTCAGAAAGGCAGCTCAGAAGGTGATAAAAATGAGCACGTCC
TATCCACATTTAGTGGAGAGCCAGTTCTAGTCCTCTGCTCGCTGACATCCTTAGCTCGCA
GGGGTTTCTGAATGCCACAAGTTGCATAAGTGATTTTGGAAGGTGAAGAGGAGAAATAGG
GGAGCACAGCCCAAGACAAACCATTAAAAACATTTGTGACAATGTGACCACTGACAAAAC
CCACTATCTAATCTCTATTTCCAGCCAGTCTCGCTCAACCCAGTGACCAGAATTTTAAAA
GGATGCTACCTCCTCTTCTGCCATGGGCTTGAGGGGCCAGCCTTGTCCCTGTGATCAAAT
GCCTGCCAGGCTTGGGAAGCCACCAGTGGGTGCTTGCCTGGAGTCTCTGTCTATCCTTAT
TTCTACAAAGAAGACTGATTTGCTTTGCCAGGGAAAGCTGTCCCCAGACTGCCCCAGCTG
CTGCTGCTCATCCTCAGGCATGTACTAGAAATAAACATTTCCCAAGCAATTTGCAGCTGG
GGGCAGAGGCCAAGTGGTGGTGGCTGGGGATGGGGAGATAGGTATGGTGGGTGTGGATGT
TTTAGTTGATATTTGGGTAATGAATACTTCTGTGAACATTTTTGTCTTTGCTGAGTATTA
GTGAGAAAAATGTGGGTGCAAGTGCTAGGCTTAGGGCCTCTTAAGAACTTCCCCCTCGGT
GAATGCCAAAAAATTAAGCAGAGGATTATTGCAAGGGAAATGGAGACAGCAGCTTCCTTG
GTGTTTGCAGAATTTCAAAACAGGCTCTGCAAATCACTGGTGGTCCTTGCAGTTTCTTTC
TTTCTTTCTTTCTTTTTTTTTTTTTGCAGTTTCTCATGGGGCTGTGCGGTAGGGAGTGTA
GTGGTTACACACATGGCCCTTGGGCTCAGAGAGACCTGGGTTAGAATTCCTGGCCCTTCA
TCAGAAGGGTGACTTGCAACTTACATTTCACCACCTATTGAATGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               942-1056, + strand, RNAz p=0.9887

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               942-1056, + strand, RNAz p=0.9887

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               17-1219, gnl|bosTau2|chr10 (9649258-9648068)
               

               
               17-1219, gnl|Hg17|chr15 (66519888-66521128)
               

               
               17-1219, gnl|Mm7|chr9 (62694129-62693009)
               


               
               1345-1484, gnl|bosTau2|chr10 (9644074-9643925)
               

               
               1345-1484, gnl|Hg17|chr15 (66521224-66521368)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1219, gnl|bosTau2|chr10 (9649258-9648068)
               

               
               17-1219, gnl|Hg17|chr15 (66519888-66521128)
               

               
               17-1219, gnl|Mm7|chr9 (62694129-62693009)
               


               
               1345-1484, gnl|bosTau2|chr10 (9644074-9643925)
               

               
               1345-1484, gnl|Hg17|chr15 (66521224-66521368)

	17-1219, gnl\|bosTau2\|chr10 (9649258-9648068)
	17-1219, gnl\|Hg17\|chr15 (66519888-66521128)
	17-1219, gnl\|Mm7\|chr9 (62694129-62693009)

	1345-1484, gnl\|bosTau2\|chr10 (9644074-9643925)
	1345-1484, gnl\|Hg17\|chr15 (66521224-66521368)