Non-Coding RNA Search

Ss1.1-Pig4-TMW8058M01.3

Sequence:


               
               TCCACCTTTACGCCGCTCGGCTTCTCCCTATGCTTCCCACTCCCTGTCCTCTCCTCAGCG
GAAGCAGAGTCCCCCACGGCATCGCTCTCCACTGAGGGAGAAAGGGAGGCATGACCATGA
ACGGACGTCACAGTCCCATGATCGGCGTCACGAAAGGAGGGAAGAGACTAGAGGCAAAAG
GGATAGAGAAAAGGATGCACGAGAAGAACGCGAGTATGAGCAGGATCAGGGCTCTTCCAG
AGACCACAGAGATGACAGAGAACCTCGAGAGGGTCGGGAGCGGAGAGATGCCAGAGATAC
TAGAGACAGAAGGGAACTCAGAGACTCCAGAGACCTTCGGGACTCCAGGGAGATGAGGGA
TTATAGCAGAGACAACAAGGAGAGCCGCGATCCCAGAGACTCTCGGTCTGCTCGTGATGC
TCACGACTACAGGGACCGTGAAAGCCGAGATGCTCACCGAAAGGAGGATGCTTATCAGGA
AGAGTCCCGGAGTTACGGCAGAAACCACTTGCGAGAAGAAAGTTCGCGCACCGAAGTGAG
GAACGATTCCAGAAATGAGTCTCGAAGTGAAATGAGGAATGACCGGATGGGCAGAAGTAG
GGGAAGAGGTCCAGAGTTACCTGAAAAGGGAAGTCGAGGCACGAGATGGTCTCAAATTGA
TAGTCACAGTAGTAGTAGCAACTACCATGACAGCTGGGAAACTCGCAGTAGCTATCCTGA
AAGAGACAGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACCTTTACGCCGCTCGGCTTCTCCCTATGCTTCCCACTCCCTGTCCTCTCCTCAGCG
GAAGCAGAGTCCCCCACGGCATCGCTCTCCACTGAGGGAGAAAGGGAGGCATGACCATGA
ACGGACGTCACAGTCCCATGATCGGCGTCACGAAAGGAGGGAAGAGACTAGAGGCAAAAG
GGATAGAGAAAAGGATGCACGAGAAGAACGCGAGTATGAGCAGGATCAGGGCTCTTCCAG
AGACCACAGAGATGACAGAGAACCTCGAGAGGGTCGGGAGCGGAGAGATGCCAGAGATAC
TAGAGACAGAAGGGAACTCAGAGACTCCAGAGACCTTCGGGACTCCAGGGAGATGAGGGA
TTATAGCAGAGACAACAAGGAGAGCCGCGATCCCAGAGACTCTCGGTCTGCTCGTGATGC
TCACGACTACAGGGACCGTGAAAGCCGAGATGCTCACCGAAAGGAGGATGCTTATCAGGA
AGAGTCCCGGAGTTACGGCAGAAACCACTTGCGAGAAGAAAGTTCGCGCACCGAAGTGAG
GAACGATTCCAGAAATGAGTCTCGAAGTGAAATGAGGAATGACCGGATGGGCAGAAGTAG
GGGAAGAGGTCCAGAGTTACCTGAAAAGGGAAGTCGAGGCACGAGATGGTCTCAAATTGA
TAGTCACAGTAGTAGTAGCAACTACCATGACAGCTGGGAAACTCGCAGTAGCTATCCTGA
AAGAGACAGATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               456-575, - strand, RNAz p=0.797456

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-575, - strand, RNAz p=0.797456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               163-630, gnl|bosTau2|chr12 (6532254-6531787)
               

               
               163-630, gnl|Hg17|chr13 (45457899-45457432)
               

               
               163-630, gnl|Mm7|chr14 (70003792-70004445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-630, gnl|bosTau2|chr12 (6532254-6531787)
               

               
               163-630, gnl|Hg17|chr13 (45457899-45457432)
               

               
               163-630, gnl|Mm7|chr14 (70003792-70004445)

	163-630, gnl\|bosTau2\|chr12 (6532254-6531787)
	163-630, gnl\|Hg17\|chr13 (45457899-45457432)
	163-630, gnl\|Mm7\|chr14 (70003792-70004445)