Non-Coding RNA Search

Ss1.1-Pig4-TMW8058N17.3

Sequence:


               
               GAGCTGTGATGGCAGCTCCTAGTTGTGTATTCATTTCTCTATTTCGGATGAGCCCCTGTC
CCACATAATGTAAAAAGTCTGTGTTTACAATTACTCAGACCACTGGTGACACCCAGAGAA
AGGCAGGGAGAGTAATCCTGGGACACCCACTTTCCCTCTTAGTGGATCCTTGGGGATTTG
CTCATCTGGGATGCAAATCGAACACACACAGCATTTTGCTGCCCTCTGCTGGCAGCAGGT
AGGCACGCAGTGCCCATAATGGCCCAAGGAGAAGCCAAGAGCTCCAAAGGATCTCCCTAG
GCAAGCAATTAGATCCTCCTGAAATGACCCAATTGTGAATCCAGGACCTGGCCACTCTGG
AAAGCCATCCTCCGTGCTGCAAGTCTGAATCAAGCTCTTCGCATACAGCTGCTAATTAAT
CCCACTGAGCCTTCTGGTCAATTAATTACAGGCCCTGGCTCATTGATGAGGCGGCCTGTG
TGAACACAGACCCTTCTATGATCTATAGTTTTAAATCACATGTGGATAAGACACTTTTCC
TCTTGGATAAAACCAAATTTATCCAGAGTCAAACATTCCACAAACACCCAAGAGGTACAT
ACTCCTGTACAATACTCCATGTTCAATGCTTTCCCTACTTTTGTAGTTACTGAACATGAT
AAGGTTAATGATGCTTGTAGCTTGGAACAATGCCTTGCAAATTCAGAAAAGAGGCCGTAG
ATCAACAGAAACTTGACAGCCAGAGCTGATAGGCTGTTCTACAACCATCATCGTGATCAT
TTGCGTTGGGCATTTTGCTCAGGTCTAGAGCCTAATCTGAGGTAATGAAAGATTGTGATA
ATACGTAGAGAAGCTACCATCCTTTTCTTATAAAGAAATCTATGTTGATTCATTCGGTCA
TTCATATATATATTTTTGGAATTCTGTATGAAATACAGAAGATTAAAAAAATGCACAAGA
AGCCTCTGCCCTCAGGAAACTCTCAATCTCAGACAAGCTAAATCTATATTCAAAGTTAGT
CTAGAATGTTTAGTATGAGACGGTCATGTCATAGTACTTCACAGAATCAAATAGTCAGCC
ACACCCCTGCTGGTTTCTACTTTCCTTAAGGCCTAGTTCCTGGAAACATTCATTCATTCA
CGTAAACCTTGAGGGTTTTACTGTGTATCCAGCACCAGGTGAGGCATAGTGGATTCTACA
GCAAGCACAGCGACACTGGTCCTGCCCTTGTGAAACTTACAGATGAGTGATGCAAGCAGG
CATTAAGTAACCACACAAGTACAAACCAACAAACCAATAACGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGTGATGGCAGCTCCTAGTTGTGTATTCATTTCTCTATTTCGGATGAGCCCCTGTC
CCACATAATGTAAAAAGTCTGTGTTTACAATTACTCAGACCACTGGTGACACCCAGAGAA
AGGCAGGGAGAGTAATCCTGGGACACCCACTTTCCCTCTTAGTGGATCCTTGGGGATTTG
CTCATCTGGGATGCAAATCGAACACACACAGCATTTTGCTGCCCTCTGCTGGCAGCAGGT
AGGCACGCAGTGCCCATAATGGCCCAAGGAGAAGCCAAGAGCTCCAAAGGATCTCCCTAG
GCAAGCAATTAGATCCTCCTGAAATGACCCAATTGTGAATCCAGGACCTGGCCACTCTGG
AAAGCCATCCTCCGTGCTGCAAGTCTGAATCAAGCTCTTCGCATACAGCTGCTAATTAAT
CCCACTGAGCCTTCTGGTCAATTAATTACAGGCCCTGGCTCATTGATGAGGCGGCCTGTG
TGAACACAGACCCTTCTATGATCTATAGTTTTAAATCACATGTGGATAAGACACTTTTCC
TCTTGGATAAAACCAAATTTATCCAGAGTCAAACATTCCACAAACACCCAAGAGGTACAT
ACTCCTGTACAATACTCCATGTTCAATGCTTTCCCTACTTTTGTAGTTACTGAACATGAT
AAGGTTAATGATGCTTGTAGCTTGGAACAATGCCTTGCAAATTCAGAAAAGAGGCCGTAG
ATCAACAGAAACTTGACAGCCAGAGCTGATAGGCTGTTCTACAACCATCATCGTGATCAT
TTGCGTTGGGCATTTTGCTCAGGTCTAGAGCCTAATCTGAGGTAATGAAAGATTGTGATA
ATACGTAGAGAAGCTACCATCCTTTTCTTATAAAGAAATCTATGTTGATTCATTCGGTCA
TTCATATATATATTTTTGGAATTCTGTATGAAATACAGAAGATTAAAAAAATGCACAAGA
AGCCTCTGCCCTCAGGAAACTCTCAATCTCAGACAAGCTAAATCTATATTCAAAGTTAGT
CTAGAATGTTTAGTATGAGACGGTCATGTCATAGTACTTCACAGAATCAAATAGTCAGCC
ACACCCCTGCTGGTTTCTACTTTCCTTAAGGCCTAGTTCCTGGAAACATTCATTCATTCA
CGTAAACCTTGAGGGTTTTACTGTGTATCCAGCACCAGGTGAGGCATAGTGGATTCTACA
GCAAGCACAGCGACACTGGTCCTGCCCTTGTGAAACTTACAGATGAGTGATGCAAGCAGG
CATTAAGTAACCACACAAGTACAAACCAACAAACCAATAACGGCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               78-270, + strand, RNAz p=0.900463

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-270, + strand, RNAz p=0.900463

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-612, gnl|bosTau2|chr7 (47342325-47341725)
               

               
               4-612, gnl|Hg17|chr5 (158055511-158054922)
               

               
               4-612, gnl|Mm7|chr11 (44964839-44965543)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-612, gnl|bosTau2|chr7 (47342325-47341725)
               

               
               4-612, gnl|Hg17|chr5 (158055511-158054922)
               

               
               4-612, gnl|Mm7|chr11 (44964839-44965543)

	4-612, gnl\|bosTau2\|chr7 (47342325-47341725)
	4-612, gnl\|Hg17\|chr5 (158055511-158054922)
	4-612, gnl\|Mm7\|chr11 (44964839-44965543)