Non-Coding RNA Search

Ss1.1-Pig4-TMW8058P10.5

Sequence:


               
               TCAATTGCACTCTTTATTTTGTAAAATAGTTCTGACCTCACACCCCTATATAACCACTTC
AACGGACCCTCAGAGGTTCCCATACCACACTTTGAGAACCTCTGCTCTCAGGAGACATGT
TCAATAAATATCTTTATCTGACTGAACGGGATTTTCCATGAGTCCTAAAGAGCTGTGTGT
TCCTTTTATTTTAAGTAGTACTCAATAAACATTTGCTTAATGAAATTGTCCAGAAAGACA
AAAACATCACATATTTTGAGATTTTCATTCCTTTACGGTGTAAGTCTTTACCAATATATT
TTATCTGTCTCCTAAATTCATTGATTCATTCCATAAACATGCTCAAGTTCCTAACGTATC
CCAAGCCAAGTGCTACTCACTGAAAATACAAATACGAAAAGAATCTCAGACTACACCCTC
CACGAACTCATAAGATGTGAACCAGTCATTAAGCAGTTATACTTTACTGTGAAGAGTGCG
AACCTAGGAAAATGCAAAAGCCAAGGAAACGCTGACGAGAGAGTGCCTGTTCATACATGA
AGATTCAGGTAAGACTCCACCCAATAGCGTTTGGAGTCTTTAAAGAGTGACAGAATTCAC
CAGTAAGTAAAAACAGTGGAAGGTGTTCCAGGCAGTAGATGAGGCAGTGCCCTCAACATG
AAGCAATGTCATTCATTTGACAAAGTGAGTGTGGATCCATCATCTCTTTGGACGTCAGGA
TTAGTAAAGGGAGGAAAAGGTGGAGATGAGCCTGAACAGAACCAAATCCGAAAGGCCCTG
TTTGCCACCCAGATGAGCTTACACGTTATTAACATAGAGAAGCACCAAGGAAATGTTAAA
TGAGTGAGTAGCACATCGTAAATTATGTTTTGGAGATTATGAGATAGATATTCAGAAGAA
TGAGTCAAAGTCAAAGGAAACGGTTCGGGTTCCATTAATAATTTATGTAATAGAAGCTGC
GGGGTGGTAAGTAAGATAGAATCAGGGGATGTAAAAAAGACAGGGATACGTTTGATAAAG
ACTTTGGAAATAGTTTTAGTTGTAGGATCCAGGCTAGGCAACTGGATGAATGGTAACAGC
ATCATCTTGAAATTCAAAGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATTGCACTCTTTATTTTGTAAAATAGTTCTGACCTCACACCCCTATATAACCACTTC
AACGGACCCTCAGAGGTTCCCATACCACACTTTGAGAACCTCTGCTCTCAGGAGACATGT
TCAATAAATATCTTTATCTGACTGAACGGGATTTTCCATGAGTCCTAAAGAGCTGTGTGT
TCCTTTTATTTTAAGTAGTACTCAATAAACATTTGCTTAATGAAATTGTCCAGAAAGACA
AAAACATCACATATTTTGAGATTTTCATTCCTTTACGGTGTAAGTCTTTACCAATATATT
TTATCTGTCTCCTAAATTCATTGATTCATTCCATAAACATGCTCAAGTTCCTAACGTATC
CCAAGCCAAGTGCTACTCACTGAAAATACAAATACGAAAAGAATCTCAGACTACACCCTC
CACGAACTCATAAGATGTGAACCAGTCATTAAGCAGTTATACTTTACTGTGAAGAGTGCG
AACCTAGGAAAATGCAAAAGCCAAGGAAACGCTGACGAGAGAGTGCCTGTTCATACATGA
AGATTCAGGTAAGACTCCACCCAATAGCGTTTGGAGTCTTTAAAGAGTGACAGAATTCAC
CAGTAAGTAAAAACAGTGGAAGGTGTTCCAGGCAGTAGATGAGGCAGTGCCCTCAACATG
AAGCAATGTCATTCATTTGACAAAGTGAGTGTGGATCCATCATCTCTTTGGACGTCAGGA
TTAGTAAAGGGAGGAAAAGGTGGAGATGAGCCTGAACAGAACCAAATCCGAAAGGCCCTG
TTTGCCACCCAGATGAGCTTACACGTTATTAACATAGAGAAGCACCAAGGAAATGTTAAA
TGAGTGAGTAGCACATCGTAAATTATGTTTTGGAGATTATGAGATAGATATTCAGAAGAA
TGAGTCAAAGTCAAAGGAAACGGTTCGGGTTCCATTAATAATTTATGTAATAGAAGCTGC
GGGGTGGTAAGTAAGATAGAATCAGGGGATGTAAAAAAGACAGGGATACGTTTGATAAAG
ACTTTGGAAATAGTTTTAGTTGTAGGATCCAGGCTAGGCAACTGGATGAATGGTAACAGC
ATCATCTTGAAATTCAAAGGACAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               53-172, - strand, RNAz p=0.740951
               

               
               526-645, - strand, RNAz p=0.512766

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-172, - strand, RNAz p=0.740951
               

               
               526-645, - strand, RNAz p=0.512766

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               14-1037, gnl|bosTau2|chr18 (20124148-20125150)
               

               
               14-1037, gnl|Hg17|chr16 (52246447-52245461)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1037, gnl|bosTau2|chr18 (20124148-20125150)
               

               
               14-1037, gnl|Hg17|chr16 (52246447-52245461)

	53-172, - strand, RNAz p=0.740951
	526-645, - strand, RNAz p=0.512766

	14-1037, gnl\|bosTau2\|chr18 (20124148-20125150)
	14-1037, gnl\|Hg17\|chr16 (52246447-52245461)