Non-Coding RNA Search

Ss1.1-Pig4-TMW8058P20.3.5

Sequence:


               
               CTGCCTTTGCAGACACTGCATCCTTGGACTCTCAGCTCTATCTTGTCTACTTGGGGAGAT
TATGGAGATCACCCTGCACTCCCACTCCTTGTGCTAAGATGTGGAAATGCTCTCTCCGCA
GTAAACTGAGTCAAGTGTGTGGATCACATTGGTTTACACTGTTAGGCACTACTGTTGTGT
TGTCAGGTTCCAATGTCTGAAAAACCTTTATTCATATTTTATCTAGTGGTTTCTTGTTTT
AGGCAGGAAGGTCAATCCAGCCTTGATTCTTCCTATTGTGGCTTGAAGCACAGTATTTGA
AGAAACAAACTCTAGACTTAAGAATACAAGAATGGAGTTCTCTTGTGGCACAGTGGGTTA
AGGATCTAGTCAGCATTGTCACTGCAGCAACTTGGATCCCTGCTGAGGCACAGGTTCAAT
CCCTGGACTGGGAATTTCTGTATGCAGTGACTATGGCAAAAGAACAAAAAAAAAAAAGAA
TTAGAAGACTACAGAGTTTCCACACACCCTTCCCTCAGCTTGCCTAATGTAATAACGTTT
GACCTGACTGTAGTATAATGATCAAAACCAGGACATTGACATTGGATAGAATGCTGTGAA
TCAAATGACAGGGTTTGATTGGATTTCATTGTTTTTGCCACTGAATTTCCAAAAATCAAA
TCCATAATCCTGTACTGCATTTAGTTCTCTTGCCTTTCATGACCTAAAAATGTTATGTAC
TGGATAAATTATTTTACAGAGGTTCTTCATTTTGGTCTGCCAGTAGCTTCCTCACGGTTA
TGCATGTTTTGGTGAGAATACTACCCAAGTGTTTGCCCTTCTTAGTGTGTTACATTGATG
CCAGTGTCTCACTATTGGTGATCATTTGGTTAAAGTGGTGTGTGCAGTGTTTTATCTTTG
TAATTAAGTACTTAGGAAAGATTCATTGAGACCATTCTAATATCCCATTTCTTCCTTAGA
CTTTCACCTTTAAATTTTACCATCCATCAATGGATTTCGTATATAATTTTCAATGTTAGA
ATGGTGATTTTCCTCATTAATTAGAATTCTTCACCATTCAGTTGAACCACAATTCCTCCT
TTGGGGTAGCTTAATTTCATGGTTCAGGAAAGCATTAAATAGGATAGGTCTGGAATGTCC
CCTAGCTTCCAGGTAGGCTCGGGAAAATGTGGAAAGCTAAAGGAGCAAATGAAAAAATAG
CAAAGCAAAAGAATAAAGTTTTATCAATTTGAGCACCAAGAAAAGGTATCAGAAACAATA
ATTACATTTTCGTTTATTGGATTAGCAGTCTGTGAAATGACAGGAGTTCATAACCAAGTT
CAAAGAAAACTGTTAATATGACCAAAATGTAGCTGTAATTACAGATAAAGGAGAAAATAA
AGATATGTTTTATCACTAATTTTTTTCGTTTATTCATTAGTTATTTCAAGAAGTGTCAAG
ACTTATTTTATTTCTGTCATTAATTTTAAATCTATTTATAACATTTAGATAGTTCATTGT
TTTAATTTGTTCAAGTAAGCAAAAAATATTAAAAACATACAAAGTGTAGGGCAAGTGGTT
CTGGAGTACTATCCAAGAAGAGTGAAATTAATCAGCTTTGATGCTAACTCAGAACAGATC
AATGAACAAATCATCAGTGTAGTCACAAGGGAACTCAGTAAATAGAGTGAGCTATTAATA
GCAATATTAATCATTATAATACAGTTGAATTATTTCAGATATGAAACAGCATATATCCTA
ATAAACAGAGTAACAACATGGAGTTCTCTTTTGTGGTTCAGTGGTAATGAACCTGACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTTTGCAGACACTGCATCCTTGGACTCTCAGCTCTATCTTGTCTACTTGGGGAGAT
TATGGAGATCACCCTGCACTCCCACTCCTTGTGCTAAGATGTGGAAATGCTCTCTCCGCA
GTAAACTGAGTCAAGTGTGTGGATCACATTGGTTTACACTGTTAGGCACTACTGTTGTGT
TGTCAGGTTCCAATGTCTGAAAAACCTTTATTCATATTTTATCTAGTGGTTTCTTGTTTT
AGGCAGGAAGGTCAATCCAGCCTTGATTCTTCCTATTGTGGCTTGAAGCACAGTATTTGA
AGAAACAAACTCTAGACTTAAGAATACAAGAATGGAGTTCTCTTGTGGCACAGTGGGTTA
AGGATCTAGTCAGCATTGTCACTGCAGCAACTTGGATCCCTGCTGAGGCACAGGTTCAAT
CCCTGGACTGGGAATTTCTGTATGCAGTGACTATGGCAAAAGAACAAAAAAAAAAAAGAA
TTAGAAGACTACAGAGTTTCCACACACCCTTCCCTCAGCTTGCCTAATGTAATAACGTTT
GACCTGACTGTAGTATAATGATCAAAACCAGGACATTGACATTGGATAGAATGCTGTGAA
TCAAATGACAGGGTTTGATTGGATTTCATTGTTTTTGCCACTGAATTTCCAAAAATCAAA
TCCATAATCCTGTACTGCATTTAGTTCTCTTGCCTTTCATGACCTAAAAATGTTATGTAC
TGGATAAATTATTTTACAGAGGTTCTTCATTTTGGTCTGCCAGTAGCTTCCTCACGGTTA
TGCATGTTTTGGTGAGAATACTACCCAAGTGTTTGCCCTTCTTAGTGTGTTACATTGATG
CCAGTGTCTCACTATTGGTGATCATTTGGTTAAAGTGGTGTGTGCAGTGTTTTATCTTTG
TAATTAAGTACTTAGGAAAGATTCATTGAGACCATTCTAATATCCCATTTCTTCCTTAGA
CTTTCACCTTTAAATTTTACCATCCATCAATGGATTTCGTATATAATTTTCAATGTTAGA
ATGGTGATTTTCCTCATTAATTAGAATTCTTCACCATTCAGTTGAACCACAATTCCTCCT
TTGGGGTAGCTTAATTTCATGGTTCAGGAAAGCATTAAATAGGATAGGTCTGGAATGTCC
CCTAGCTTCCAGGTAGGCTCGGGAAAATGTGGAAAGCTAAAGGAGCAAATGAAAAAATAG
CAAAGCAAAAGAATAAAGTTTTATCAATTTGAGCACCAAGAAAAGGTATCAGAAACAATA
ATTACATTTTCGTTTATTGGATTAGCAGTCTGTGAAATGACAGGAGTTCATAACCAAGTT
CAAAGAAAACTGTTAATATGACCAAAATGTAGCTGTAATTACAGATAAAGGAGAAAATAA
AGATATGTTTTATCACTAATTTTTTTCGTTTATTCATTAGTTATTTCAAGAAGTGTCAAG
ACTTATTTTATTTCTGTCATTAATTTTAAATCTATTTATAACATTTAGATAGTTCATTGT
TTTAATTTGTTCAAGTAAGCAAAAAATATTAAAAACATACAAAGTGTAGGGCAAGTGGTT
CTGGAGTACTATCCAAGAAGAGTGAAATTAATCAGCTTTGATGCTAACTCAGAACAGATC
AATGAACAAATCATCAGTGTAGTCACAAGGGAACTCAGTAAATAGAGTGAGCTATTAATA
GCAATATTAATCATTATAATACAGTTGAATTATTTCAGATATGAAACAGCATATATCCTA
ATAAACAGAGTAACAACATGGAGTTCTCTTTTGTGGTTCAGTGGTAATGAACCTGACTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1638-1755, - strand, RNAz p=0.555502

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1638-1755, - strand, RNAz p=0.555502

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               14-337, gnl|bosTau2|chr18 (43116180-43116509)
               


               
               476-774, gnl|bosTau2|chr18 (43116491-43116802)
               


               
               780-1143, gnl|bosTau2|chr18 (43117055-43117428)
               


               
               1144-1755, gnl|bosTau2|chr18 (43117454-43118105)
               

               
               1144-1755, gnl|Hg17|chr19 (41726819-41727422)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-337, gnl|bosTau2|chr18 (43116180-43116509)
               


               
               476-774, gnl|bosTau2|chr18 (43116491-43116802)
               


               
               780-1143, gnl|bosTau2|chr18 (43117055-43117428)
               


               
               1144-1755, gnl|bosTau2|chr18 (43117454-43118105)
               

               
               1144-1755, gnl|Hg17|chr19 (41726819-41727422)

	14-337, gnl\|bosTau2\|chr18 (43116180-43116509)

	476-774, gnl\|bosTau2\|chr18 (43116491-43116802)

	780-1143, gnl\|bosTau2\|chr18 (43117055-43117428)

	1144-1755, gnl\|bosTau2\|chr18 (43117454-43118105)
	1144-1755, gnl\|Hg17\|chr19 (41726819-41727422)