Non-Coding RNA Search

Ss1.1-Pig4-TMW8059C13.3

Sequence:


               
               GGATTTAAAGGCCATTTTGCTCAGTCGCCTCCAGAAACAATTTTAGTCAAGGTCCAGCTT
TAAATGGTTGTTAGCCGGGTCAAGCTAGAGATTAGGAAAGGTGAGATGAAATCAACTCAG
GGTCTGGCACCAGTTACAAAAGGAAGCAGGTCATTGGGTTGTGTTTATAGAGGAAAGAGA
ATGGATTGTAAGATTGTTATCTCTGGAATCGAGGTGAGGGAGGGGGAGACCCTCATTTGA
AGCCTTGGCCCCCAGACCAAAGGAGCCCAGAAGGCTTTAAGGACTCACACGTAATTGGCC
CTACATTCCACCGGAAGAAGCCCTGCCTCGGGCTCCATCCCTGCGCCTTGAAGAAGCGGA
AAAGCAGGGGAGGGGGAAGGGGAGGGCCCTCTGGCATCCTGTGAAGATGTTTCTAAAGCA
TCTCCAGATTTTCCAGCCTCGTTTCAGGCTTTATATTGAAAACTGGAAGATGCGTAGAAG
CCCGGGCCACCAACGTGGGGGACGTTGCTTTAGCTGCCGCATCAGTGAGCGGTGACACAG
ACAGATTCTACAGTCCGGGTTTTTTGGAGCTGGGCCATCTCCTTTTGCCCTTAGACCTCA
ATGTTTTGTAGTGCTTTTTATAGTTTGCAGCACACACGGTCCTTGACCCTAGAGGGAGAA
AAAGAAGAAGTTAATTCTCCACGTTACCCTTTGAGGATCCAGGTAACGGAGGGAAAAACA
CAAAGTACAGTGTTACTAGCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTAAAGGCCATTTTGCTCAGTCGCCTCCAGAAACAATTTTAGTCAAGGTCCAGCTT
TAAATGGTTGTTAGCCGGGTCAAGCTAGAGATTAGGAAAGGTGAGATGAAATCAACTCAG
GGTCTGGCACCAGTTACAAAAGGAAGCAGGTCATTGGGTTGTGTTTATAGAGGAAAGAGA
ATGGATTGTAAGATTGTTATCTCTGGAATCGAGGTGAGGGAGGGGGAGACCCTCATTTGA
AGCCTTGGCCCCCAGACCAAAGGAGCCCAGAAGGCTTTAAGGACTCACACGTAATTGGCC
CTACATTCCACCGGAAGAAGCCCTGCCTCGGGCTCCATCCCTGCGCCTTGAAGAAGCGGA
AAAGCAGGGGAGGGGGAAGGGGAGGGCCCTCTGGCATCCTGTGAAGATGTTTCTAAAGCA
TCTCCAGATTTTCCAGCCTCGTTTCAGGCTTTATATTGAAAACTGGAAGATGCGTAGAAG
CCCGGGCCACCAACGTGGGGGACGTTGCTTTAGCTGCCGCATCAGTGAGCGGTGACACAG
ACAGATTCTACAGTCCGGGTTTTTTGGAGCTGGGCCATCTCCTTTTGCCCTTAGACCTCA
ATGTTTTGTAGTGCTTTTTATAGTTTGCAGCACACACGGTCCTTGACCCTAGAGGGAGAA
AAAGAAGAAGTTAATTCTCCACGTTACCCTTTGAGGATCCAGGTAACGGAGGGAAAAACA
CAAAGTACAGTGTTACTAGCCGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               599-717, - strand, RNAz p=0.791994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-717, - strand, RNAz p=0.791994

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-736, gnl|bosTau2|chr5 (62600145-62599421)
               

               
               1-736, gnl|Hg17|chrX (132741920-132741185)
               

               
               1-736, gnl|Mm7|chrX (47619704-47618999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-736, gnl|bosTau2|chr5 (62600145-62599421)
               

               
               1-736, gnl|Hg17|chrX (132741920-132741185)
               

               
               1-736, gnl|Mm7|chrX (47619704-47618999)

	1-736, gnl\|bosTau2\|chr5 (62600145-62599421)
	1-736, gnl\|Hg17\|chrX (132741920-132741185)
	1-736, gnl\|Mm7\|chrX (47619704-47618999)