Non-Coding RNA Search

Ss1.1-Pig4-TMW8059D19.3

Sequence:


               
               ATGGGAAGGCAATGATGAGATTTGAGCAAAAACTTGATGTTACCCAATTTGCTTCATGGA
GAGATCTCTGTGGCTGGTGTGTGAGGAATGGGTGATTGAAGGTTCCATGGCAGCAGGTGA
ACCAATTAGGGCATGATGGGAGTAGCCTAAATGAGAAGGGAGGAAAACTTGAACCACAAT
GATGTATGGGGAGGAAGAGAAATCCTCAGCTCCCAGGCTTTGAGGAAGTAGCCAATAAAG
ACCTGTTCTAAGAACTGATGGTGGGCGATGAGGGGATGGAGAGGTGAACGCTTGGCTGGG
AGTGGCTGGGGTACTTTCTTGTTGAATGGCTTATCCAGTGTGAGAGGGAGGCAGAGTGGA
GTCATCATCTATTAACTTTGCTAGATCATTTCAGGAACTACCTCACCTATTTTGAAAAAC
GGGTCTTGTGTGAGAGCTGTATTCCTTCTTTATAAGATGCTAGAAGATTTTTCTAACCTT
CTCATATCAGAGAGAGAAAGAAACTCAGGGGTTGGTGAACTTGGTGGTGTCCATCTATTA
CCCTGAAGTTTTGCCAACATTTTTATAACACCTTCACACAATCAGAGGTGCTCACTCAGT
AATTAGGGGAGAGTCACAATGAATCTGGATCCTAGACTTGACCAATGCCCCCAACCCATC
CTGAGTGGCCTTGCTGAGAACTTTCTCCTCCAGCAAATAGAAAACTCAGTTCCAGCCAAC
AAGGAGGAAATGAGTAAAGACGTGAAATTAAGCAAGCCCTGGAAGGAAATGGCCAAATCA
CGTTCGATTATGTAACAACCAGCAAGTAGAATAGAGCAAATAGTGATTAGGGGAGAAGAA
TTTTATCATAGATTTGAGGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGAAGGCAATGATGAGATTTGAGCAAAAACTTGATGTTACCCAATTTGCTTCATGGA
GAGATCTCTGTGGCTGGTGTGTGAGGAATGGGTGATTGAAGGTTCCATGGCAGCAGGTGA
ACCAATTAGGGCATGATGGGAGTAGCCTAAATGAGAAGGGAGGAAAACTTGAACCACAAT
GATGTATGGGGAGGAAGAGAAATCCTCAGCTCCCAGGCTTTGAGGAAGTAGCCAATAAAG
ACCTGTTCTAAGAACTGATGGTGGGCGATGAGGGGATGGAGAGGTGAACGCTTGGCTGGG
AGTGGCTGGGGTACTTTCTTGTTGAATGGCTTATCCAGTGTGAGAGGGAGGCAGAGTGGA
GTCATCATCTATTAACTTTGCTAGATCATTTCAGGAACTACCTCACCTATTTTGAAAAAC
GGGTCTTGTGTGAGAGCTGTATTCCTTCTTTATAAGATGCTAGAAGATTTTTCTAACCTT
CTCATATCAGAGAGAGAAAGAAACTCAGGGGTTGGTGAACTTGGTGGTGTCCATCTATTA
CCCTGAAGTTTTGCCAACATTTTTATAACACCTTCACACAATCAGAGGTGCTCACTCAGT
AATTAGGGGAGAGTCACAATGAATCTGGATCCTAGACTTGACCAATGCCCCCAACCCATC
CTGAGTGGCCTTGCTGAGAACTTTCTCCTCCAGCAAATAGAAAACTCAGTTCCAGCCAAC
AAGGAGGAAATGAGTAAAGACGTGAAATTAAGCAAGCCCTGGAAGGAAATGGCCAAATCA
CGTTCGATTATGTAACAACCAGCAAGTAGAATAGAGCAAATAGTGATTAGGGGAGAAGAA
TTTTATCATAGATTTGAGGAGAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               196-312, + strand, RNAz p=0.719069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-312, + strand, RNAz p=0.719069

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-350, gnl|bosTau2|chr11 (31578919-31578577)
               

               
               1-350, gnl|Hg17|chr2 (113316557-113316217)
               


               
               405-864, gnl|bosTau2|chr11 (31577937-31577468)
               

               
               405-864, gnl|Hg17|chr2 (113315998-113315525)
               

               
               405-864, gnl|Mm7|chr2 (129122432-129121967)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-350, gnl|bosTau2|chr11 (31578919-31578577)
               

               
               1-350, gnl|Hg17|chr2 (113316557-113316217)
               


               
               405-864, gnl|bosTau2|chr11 (31577937-31577468)
               

               
               405-864, gnl|Hg17|chr2 (113315998-113315525)
               

               
               405-864, gnl|Mm7|chr2 (129122432-129121967)

	1-350, gnl\|bosTau2\|chr11 (31578919-31578577)
	1-350, gnl\|Hg17\|chr2 (113316557-113316217)

	405-864, gnl\|bosTau2\|chr11 (31577937-31577468)
	405-864, gnl\|Hg17\|chr2 (113315998-113315525)
	405-864, gnl\|Mm7\|chr2 (129122432-129121967)