Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H13.5

Sequence:


               
               CTGTGATATCAGCCTACTCCTGAACTGGAAGGAAGAAATTTACTATTGTTGCTCTGTTTG
AACCTTCCTACATTCCCATAGAATTTTTCATATATTTGAGAAGTGACTGTGGTTTGTCAT
AGATGTTCAAGATTATGGGCATGTAGAGGTTCCTTTTTTTGTTTTACTTGGTAGAAATGA
ATAAATGCACTTTTATTATAATGACATGAATATTTTTAATATTACCATTTTGAGACAAAA
TTTTGCTATGCTTGAACATGAGTCAAGAGTATTTTTATTCCAATTTAAAATTGTAAGTTT
TAAGTATTTTAGAATACTAACCTATGAAATAATTGGTATTAGAAAAACATTCAGATAAAT
GTTTTCATTAAACAACAGTGATGAATTTTTAGAACCTGAAGAATGTCGCAATGAGCTGTT
AAAGATCTGATTATGCACTGCAAGCAAAGTAATAATGCATTATTGTACCTTTTAGAAGGA
TAGCAAAGTAAGTTTGAAATACATCAAAGGAAAGAGTTCCAGTGGAGTAAATTCTATAAG
GAGATGTACTGTTAGGCTGTAAGCAGTCTTTCATTTACTTCACTGATTGTATTCTTTCCT
TGATGTTACAGAAGCAGCGTTATGAAAGAAGTGAGAAAACAGTAGAAAAAATTTTAAGTT
TTTGATTCTTTTAATTTGCTGTTTTTTTTAAATGCAGACAGTAGTATTGTGAGAAGATCC
TATGCTGTTTAAGTATTGTTTGATGTATAATAATTTCCTACATATTAAGCATTAGCTATT
GTTAATTAAAACATGCCACTTCAAAATAAAATATACTTTCATCATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGATATCAGCCTACTCCTGAACTGGAAGGAAGAAATTTACTATTGTTGCTCTGTTTG
AACCTTCCTACATTCCCATAGAATTTTTCATATATTTGAGAAGTGACTGTGGTTTGTCAT
AGATGTTCAAGATTATGGGCATGTAGAGGTTCCTTTTTTTGTTTTACTTGGTAGAAATGA
ATAAATGCACTTTTATTATAATGACATGAATATTTTTAATATTACCATTTTGAGACAAAA
TTTTGCTATGCTTGAACATGAGTCAAGAGTATTTTTATTCCAATTTAAAATTGTAAGTTT
TAAGTATTTTAGAATACTAACCTATGAAATAATTGGTATTAGAAAAACATTCAGATAAAT
GTTTTCATTAAACAACAGTGATGAATTTTTAGAACCTGAAGAATGTCGCAATGAGCTGTT
AAAGATCTGATTATGCACTGCAAGCAAAGTAATAATGCATTATTGTACCTTTTAGAAGGA
TAGCAAAGTAAGTTTGAAATACATCAAAGGAAAGAGTTCCAGTGGAGTAAATTCTATAAG
GAGATGTACTGTTAGGCTGTAAGCAGTCTTTCATTTACTTCACTGATTGTATTCTTTCCT
TGATGTTACAGAAGCAGCGTTATGAAAGAAGTGAGAAAACAGTAGAAAAAATTTTAAGTT
TTTGATTCTTTTAATTTGCTGTTTTTTTTAAATGCAGACAGTAGTATTGTGAGAAGATCC
TATGCTGTTTAAGTATTGTTTGATGTATAATAATTTCCTACATATTAAGCATTAGCTATT
GTTAATTAAAACATGCCACTTCAAAATAAAATATACTTTCATCATAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-157, + strand, RNAz p=0.841156
               

               
               496-606, - strand, RNAz p=0.993299

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, + strand, RNAz p=0.841156
               

               
               496-606, - strand, RNAz p=0.993299

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               528-638, + strand, RNAmicro p=0.978131

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               528-638, + strand, RNAmicro p=0.978131

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-826, gnl|bosTau2|chr20 (8322328-8321502)
               

               
               2-826, gnl|Hg17|chr5 (65486603-65487438)
               

               
               2-826, gnl|Mm7|chr13 (100905851-100905127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-826, gnl|bosTau2|chr20 (8322328-8321502)
               

               
               2-826, gnl|Hg17|chr5 (65486603-65487438)
               

               
               2-826, gnl|Mm7|chr13 (100905851-100905127)

	40-157, + strand, RNAz p=0.841156
	496-606, - strand, RNAz p=0.993299

	2-826, gnl\|bosTau2\|chr20 (8322328-8321502)
	2-826, gnl\|Hg17\|chr5 (65486603-65487438)
	2-826, gnl\|Mm7\|chr13 (100905851-100905127)