Ss1.1-Pig4-TMW8059J11.5
|
GTGGTATCAGATTTTGTTCACTGCTTCTTTCTTGAAATCCCCAGGATGTAATAACCATTA
TGTACTTAACATTGATTCTAAATCAAAATTGGCGATTTCCTTTCCATTATATTTAGGAAT
CCTTAGATTTGGGGTGGTGGTGTTTTGGGGGGAGATGGTCTGGAAATCATTATTATTTTT
TTTTTTTATTTAAAGTTGTTTTGAATTTGTGCTTTTGGGTTTCTTCATTTGGAATAGGTT
AGTTTTTACTTCTGGCTTTCTTTTGAAAATGAAACAGCTGTACCCTCTTACCCAATTGCC
AGACATTCCCCCGAACTCAGACACTTAACAAGATTGATTATGCGAACGCTAATCATTTAA
TACCCAAGTAGTAGAAAACCATCTTGCGGGAGCGTGGAGGTTGCAAATTCCTGGGAAATG
ACGACTCTGAGACCTGGCAGAGGATTAGGACAGTGAGAGGACCCCCTGCGCTGCCACCCC
CGCCCCTCCGGGAGCTGTGACCTGCCCCTGGAGGGAGGCACACAGGAAGGAAGCCCTGGG
AACTTGCTGGTGGGGTGAGCCTGGACCGGGCGGGCCGAGTCTTAAGCTCACAAGTGCTTT
AAAGGTTAAAACACAATGGGATGCTTTCTTTTTATTGGAAAATAAATGAGAATGAGTGGA
AATAAATTATGTTTAATGAACCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGGTATCAGATTTTGTTCACTGCTTCTTTCTTGAAATCCCCAGGATGTAATAACCATTA
TGTACTTAACATTGATTCTAAATCAAAATTGGCGATTTCCTTTCCATTATATTTAGGAAT
CCTTAGATTTGGGGTGGTGGTGTTTTGGGGGGAGATGGTCTGGAAATCATTATTATTTTT
TTTTTTTATTTAAAGTTGTTTTGAATTTGTGCTTTTGGGTTTCTTCATTTGGAATAGGTT
AGTTTTTACTTCTGGCTTTCTTTTGAAAATGAAACAGCTGTACCCTCTTACCCAATTGCC
AGACATTCCCCCGAACTCAGACACTTAACAAGATTGATTATGCGAACGCTAATCATTTAA
TACCCAAGTAGTAGAAAACCATCTTGCGGGAGCGTGGAGGTTGCAAATTCCTGGGAAATG
ACGACTCTGAGACCTGGCAGAGGATTAGGACAGTGAGAGGACCCCCTGCGCTGCCACCCC
CGCCCCTCCGGGAGCTGTGACCTGCCCCTGGAGGGAGGCACACAGGAAGGAAGCCCTGGG
AACTTGCTGGTGGGGTGAGCCTGGACCGGGCGGGCCGAGTCTTAAGCTCACAAGTGCTTT
AAAGGTTAAAACACAATGGGATGCTTTCTTTTTATTGGAAAATAAATGAGAATGAGTGGA
AATAAATTATGTTTAATGAACCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-422, gnl|bosTau2|chr26 (22487226-22487650) |
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1-422, gnl|Hg17|chr10 (114882142-114882568) |
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1-422, gnl|Mm7|chr19 (55815717-55816116) |
| |
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478-681, gnl|bosTau2|chr26 (22487765-22487984) |
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478-681, gnl|canFam2|chr28 (27130358-27131025) |
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478-681, gnl|dasNov1|scaffold_164 (57340-56773) |
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478-681, gnl|echTel1|scaffold_278535 (7937-7365) |
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478-681, gnl|hg17|chr10 (114882331-114883002) |
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478-681, gnl|Hg17|chr10 (114882659-114882878) |
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478-681, gnl|loxAfr1|scaffold_69423 (13315-12653) |
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478-681, gnl|mm7|chr19 (55815898-55816507) |
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478-681, gnl|Mm7|chr19 (55816187-55816386) |
|
478-681, gnl|monDom2|scaffold_14 (49217379-49216725) |
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478-681, gnl|oryCun1|scaffold_136723 (15451-14760) |
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478-681, gnl|panTro1|chr8 (116990585-116991258) |
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478-681, gnl|rheMac2|chr9 (112793810-112794481) |
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478-681, gnl|rn3|chr1 (262403862-262404501) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-422, gnl|bosTau2|chr26 (22487226-22487650) |
|
1-422, gnl|Hg17|chr10 (114882142-114882568) |
|
1-422, gnl|Mm7|chr19 (55815717-55816116) |
| |
|
478-681, gnl|bosTau2|chr26 (22487765-22487984) |
|
478-681, gnl|canFam2|chr28 (27130358-27131025) |
|
478-681, gnl|dasNov1|scaffold_164 (57340-56773) |
|
478-681, gnl|echTel1|scaffold_278535 (7937-7365) |
|
478-681, gnl|hg17|chr10 (114882331-114883002) |
|
478-681, gnl|Hg17|chr10 (114882659-114882878) |
|
478-681, gnl|loxAfr1|scaffold_69423 (13315-12653) |
|
478-681, gnl|mm7|chr19 (55815898-55816507) |
|
478-681, gnl|Mm7|chr19 (55816187-55816386) |
|
478-681, gnl|monDom2|scaffold_14 (49217379-49216725) |
|
478-681, gnl|oryCun1|scaffold_136723 (15451-14760) |
|
478-681, gnl|panTro1|chr8 (116990585-116991258) |
|
478-681, gnl|rheMac2|chr9 (112793810-112794481) |
|
478-681, gnl|rn3|chr1 (262403862-262404501) |
