Non-Coding RNA Search

Ss1.1-Pig4-TMW8059O10.5

Sequence:


               
               CTTCAGCCTTGAAACACTTGGGCTTGGCAGTAATACTTCCTATGGTTAACCAGCCTTGTG
CAAAATGTATCTCAGAATGTGAGATTAGAAATGACCTTTGTCAAGGACACTCCTGGAAAA
TGAGGTCTTGGACTGTCTCTGGGGCCTCTGAGGTATTGCTGGATGTTTCCCTTGCAGAGG
TAGAGTGGATAAGATTTTACCTGAATTCCTTCAGGCTGTGGGCCCCCTGACAGGCTGGCA
TCCTCTATCTCTGTGAGTGTGGGAGTCTATTTAGAGGCCTGAGGGCCTATTCTTGTCCCC
TCTCTTCCATTCATTCACCTTTAGCTGATTGTCTCTTCCATCAGCAGAGTGTCCTTTGGC
TGCACCAGTTTAGTTTTTTCCTTCTGGCAACCACAGACAAGCATTCTGAACCTGGGGCTC
CAGAAACCTCCTGAAATACACATGGGATGTTTGCAGCATAGGTGTATATTTGCCAAATGG
TTCTCTTTTCATCACATTCTGCAAAAGGCCTGCACCCCATAGAAGTGGGTACTGAACAGC
TGGTGGGAAGATGGGAGTTCCTGCTCCCTATACAGGGCAGGGCCGATTTTTTAATGGAGT
CAAGATGGTGACATTACCTCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGCCTTGAAACACTTGGGCTTGGCAGTAATACTTCCTATGGTTAACCAGCCTTGTG
CAAAATGTATCTCAGAATGTGAGATTAGAAATGACCTTTGTCAAGGACACTCCTGGAAAA
TGAGGTCTTGGACTGTCTCTGGGGCCTCTGAGGTATTGCTGGATGTTTCCCTTGCAGAGG
TAGAGTGGATAAGATTTTACCTGAATTCCTTCAGGCTGTGGGCCCCCTGACAGGCTGGCA
TCCTCTATCTCTGTGAGTGTGGGAGTCTATTTAGAGGCCTGAGGGCCTATTCTTGTCCCC
TCTCTTCCATTCATTCACCTTTAGCTGATTGTCTCTTCCATCAGCAGAGTGTCCTTTGGC
TGCACCAGTTTAGTTTTTTCCTTCTGGCAACCACAGACAAGCATTCTGAACCTGGGGCTC
CAGAAACCTCCTGAAATACACATGGGATGTTTGCAGCATAGGTGTATATTTGCCAAATGG
TTCTCTTTTCATCACATTCTGCAAAAGGCCTGCACCCCATAGAAGTGGGTACTGAACAGC
TGGTGGGAAGATGGGAGTTCCTGCTCCCTATACAGGGCAGGGCCGATTTTTTAATGGAGT
CAAGATGGTGACATTACCTCTGTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-196, - strand, RNAz p=0.954492
               

               
               237-345, + strand, RNAz p=0.58618

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.954492
               

               
               237-345, + strand, RNAz p=0.58618

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               214-303, + strand, RNAmicro p=0.993841

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               214-303, + strand, RNAmicro p=0.993841

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-623, gnl|bosTau2|chr22 (33004932-33004297)
               

               
               1-623, gnl|Hg17|chr3 (57086979-57086373)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-623, gnl|bosTau2|chr22 (33004932-33004297)
               

               
               1-623, gnl|Hg17|chr3 (57086979-57086373)

	80-196, - strand, RNAz p=0.954492
	237-345, + strand, RNAz p=0.58618

	1-623, gnl\|bosTau2\|chr22 (33004932-33004297)
	1-623, gnl\|Hg17\|chr3 (57086979-57086373)