Non-Coding RNA Search

Ss1.1-Pig4-TMW8059P19.3

Sequence:


               
               GGCCCATCTGCCCCACGACCTCGGCAAAGCCTCTCTGTTGCAGGTTCGGGACTGGACGGG
CTCCGTGCTCTGCTCTCCATCAGACCTGCCAGCCAAGGGCTTCAGCAACCAGATCCCACT
GGTGGCGCGGGGGAACTGCACCTTCTATGAGAAAGTGCGGCTGGCCCAGGGCAGCGGGGC
ACGTGGGCTGCTCATCGTCAGCAAGGAGACACTGGTCCCCCCAGGAGGCAACAAGACGCA
ATATGATGAGATTGGCATTCCTGTGGCCCTGCTCAGCTACAGGGACATGCTGGACATTTT
CGAGACTTTCGGCCGGACGGTGCGGGCAGCGCTGTATGCACCCAAGGAGCCAATGCTGGA
CTACAACATGGTCATCATCTTCATCATGGCTGTGGGCACTGTCGCCCTGGGGGGCTACTG
GGCCGGGAGCCGGGACGTGAGGAAGAGGTACATGAAACACAAGCGGGACGATGGGCCCGA
AGAAACAGGAGGATGAAGCCGTGGACGTGACGCCCGTCATGATCTGCGTCTTCGTGGTCA
TGTGCTGCTCCATGCTTGTGTTGCTCTACTTCTTCTACGACCAGCTTGTCTACGTTATCA
TCGGGATCTTCTGCCTGGCCTCCTCCACTGGCCTGTACAGCTGCTTGTCACCCCTCATCC
AGAGGCTGCCATTCTGCAAGTGCAGGGTCCCTGACAACAGCCTGCCCTACTTCCACAAGC
GGCCTCAGGTCCGCACGCTGCTCCTGGCGCTGCTGTGCGTGGCAGTCAGCGTGGTGTGGG
GTGTCTTCCGGAACGAGGACCAGTGGGCTTGGATCCTTCAGGATGCTCTGGGCATTGCCT
TCTGCCTCTACACATTGAAAACCATCCGCCTCCCCACATTCAAGGCCTGCACACTGCTGC
TGCTGGTGCTCTTCATCTACGACGTCTTCTTCGTGTTCATCACGCCCTTCCTGACCAAGA
GTGGGAACAGCATCATGGTGGAGGTGGCTACTGGGCCGTCGGACTCGGCTACCCACGAGA
AGCTCCCCATGGTCCTGAAGGTGCCCAGACTGAATGCTTCACCACTGGCCCTGTGTGACC
GGCCCTTCTCCCTCCTGGGCTTTGGGGACATCCTGGTCCCAGGGCTGCTCGTGGCCTACT
GCCACCGCTTTGACATCCAGGTGCAATCCTCCAGGGTCTACTTCGTGGCCTGCACCATCG
CCTACGGCATTGGCCTCCTGGTGACGTTCATGGCGCTGGCCCTCATGCAGCGCGGCCAGC
CCGCCCTCCTCTACCTGGTGCCCTGCACTCTCGTCACCAGCTGCGCCCTGGCGCTCTGGC
GCAGGGAGCTGGGCATGTTCTGGACGGGCAGCGGCTTTGCGGTGAATACCAGTTTGCTAT
GACTGTCTGCAAGAAATAATAGCCTAATAAGCCCTAACTAGAGTTAAAGTTGAGTAAGAC
CTCCTAGTGTTACAACTAAACCCCGCAGCCCGCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCATCTGCCCCACGACCTCGGCAAAGCCTCTCTGTTGCAGGTTCGGGACTGGACGGG
CTCCGTGCTCTGCTCTCCATCAGACCTGCCAGCCAAGGGCTTCAGCAACCAGATCCCACT
GGTGGCGCGGGGGAACTGCACCTTCTATGAGAAAGTGCGGCTGGCCCAGGGCAGCGGGGC
ACGTGGGCTGCTCATCGTCAGCAAGGAGACACTGGTCCCCCCAGGAGGCAACAAGACGCA
ATATGATGAGATTGGCATTCCTGTGGCCCTGCTCAGCTACAGGGACATGCTGGACATTTT
CGAGACTTTCGGCCGGACGGTGCGGGCAGCGCTGTATGCACCCAAGGAGCCAATGCTGGA
CTACAACATGGTCATCATCTTCATCATGGCTGTGGGCACTGTCGCCCTGGGGGGCTACTG
GGCCGGGAGCCGGGACGTGAGGAAGAGGTACATGAAACACAAGCGGGACGATGGGCCCGA
AGAAACAGGAGGATGAAGCCGTGGACGTGACGCCCGTCATGATCTGCGTCTTCGTGGTCA
TGTGCTGCTCCATGCTTGTGTTGCTCTACTTCTTCTACGACCAGCTTGTCTACGTTATCA
TCGGGATCTTCTGCCTGGCCTCCTCCACTGGCCTGTACAGCTGCTTGTCACCCCTCATCC
AGAGGCTGCCATTCTGCAAGTGCAGGGTCCCTGACAACAGCCTGCCCTACTTCCACAAGC
GGCCTCAGGTCCGCACGCTGCTCCTGGCGCTGCTGTGCGTGGCAGTCAGCGTGGTGTGGG
GTGTCTTCCGGAACGAGGACCAGTGGGCTTGGATCCTTCAGGATGCTCTGGGCATTGCCT
TCTGCCTCTACACATTGAAAACCATCCGCCTCCCCACATTCAAGGCCTGCACACTGCTGC
TGCTGGTGCTCTTCATCTACGACGTCTTCTTCGTGTTCATCACGCCCTTCCTGACCAAGA
GTGGGAACAGCATCATGGTGGAGGTGGCTACTGGGCCGTCGGACTCGGCTACCCACGAGA
AGCTCCCCATGGTCCTGAAGGTGCCCAGACTGAATGCTTCACCACTGGCCCTGTGTGACC
GGCCCTTCTCCCTCCTGGGCTTTGGGGACATCCTGGTCCCAGGGCTGCTCGTGGCCTACT
GCCACCGCTTTGACATCCAGGTGCAATCCTCCAGGGTCTACTTCGTGGCCTGCACCATCG
CCTACGGCATTGGCCTCCTGGTGACGTTCATGGCGCTGGCCCTCATGCAGCGCGGCCAGC
CCGCCCTCCTCTACCTGGTGCCCTGCACTCTCGTCACCAGCTGCGCCCTGGCGCTCTGGC
GCAGGGAGCTGGGCATGTTCTGGACGGGCAGCGGCTTTGCGGTGAATACCAGTTTGCTAT
GACTGTCTGCAAGAAATAATAGCCTAATAAGCCCTAACTAGAGTTAAAGTTGAGTAAGAC
CTCCTAGTGTTACAACTAAACCCCGCAGCCCGCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BXJ5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BXJ5_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1104-1303, - strand, RNAz p=0.847549

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1104-1303, - strand, RNAz p=0.847549

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               32-225, gnl|bosTau2|chr7 (18013248-18013052)
               

               
               32-225, gnl|Hg17|chr19 (2288442-2288637)
               

               
               32-225, gnl|Mm7|chr10 (80651785-80651981)
               


               
               256-426, gnl|bosTau2|chr19 (42117035-42116859)
               

               
               256-426, gnl|Hg17|chr17 (41278493-41278669)
               

               
               256-426, gnl|Mm7|chr11 (104295875-104296051)
               


               
               473-1349, gnl|bosTau2|chr19 (42116764-42115895)
               

               
               473-1349, gnl|Hg17|chr17 (41278765-41279636)
               

               
               473-1349, gnl|Mm7|chr11 (104296153-104297027)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-225, gnl|bosTau2|chr7 (18013248-18013052)
               

               
               32-225, gnl|Hg17|chr19 (2288442-2288637)
               

               
               32-225, gnl|Mm7|chr10 (80651785-80651981)
               


               
               256-426, gnl|bosTau2|chr19 (42117035-42116859)
               

               
               256-426, gnl|Hg17|chr17 (41278493-41278669)
               

               
               256-426, gnl|Mm7|chr11 (104295875-104296051)
               


               
               473-1349, gnl|bosTau2|chr19 (42116764-42115895)
               

               
               473-1349, gnl|Hg17|chr17 (41278765-41279636)
               

               
               473-1349, gnl|Mm7|chr11 (104296153-104297027)

	32-225, gnl\|bosTau2\|chr7 (18013248-18013052)
	32-225, gnl\|Hg17\|chr19 (2288442-2288637)
	32-225, gnl\|Mm7\|chr10 (80651785-80651981)

	256-426, gnl\|bosTau2\|chr19 (42117035-42116859)
	256-426, gnl\|Hg17\|chr17 (41278493-41278669)
	256-426, gnl\|Mm7\|chr11 (104295875-104296051)

	473-1349, gnl\|bosTau2\|chr19 (42116764-42115895)
	473-1349, gnl\|Hg17\|chr17 (41278765-41279636)
	473-1349, gnl\|Mm7\|chr11 (104296153-104297027)