Non-Coding RNA Search

Ss1.1-Pig4-TMW8060B14.3

Sequence:


               
               TGGCAATGATGTTTTATATATTAGCCCCCTCCTGTCCTCACACAGGCATGAGGAAGATTA
ATGCCCTGGAAATCTTCTATGGTCTAGCACTGTATTATTATTGTTATTATGAAGATTATC
CTAGAGTTTCCATTTTTGGAGGTGGCTGCTATAATGAGGGTAACTGGTGTGGATATTTCA
GAAAGATTTCACAAATGATGAAGCTATAATTAGCCACTTAGACTGGGCAGTAGCTTTTCC
AAATGCCAGGTGGTGGTGGGAATCTCTAGTTATCATTCCTGCACCATTGACAGAGAAACT
GAGACCCAGAGAATTCAAAGACCCACTCAAGTCCTTGGCGTGAGTGAGCATTAGACAGCT
CTGGAGCCCAGCACCCCAGCTGAAATGACTGTCCTCAAATATGTTAACAGGATTAGAATG
GGGGGTTCAGGGAGTTCCCAGGGGGCATGGGTTAAGGATGGGCTCAGCTCACTGCTGCAG
CTCAGGTTTGATCCCTGGCCCGGGAACTTCCACATGCCACAAGTGTGGCCAAAAATAAAT
AAACACATTTATTAATTCAATAAAACAGAATGGGTGTTCATGCACAGCTCACCTGTGCCA
CATTTTTCAGTGAGTGGCTTGCACACTACCATTTGGTCCAATGCGCTTGGCAGATGCAAA
CACAAGGAAAAGGCTCCAGAATGCATGCTTTTTTTCTGGAAGTGGAAAGAGAATGAGTGG
AGGCAGCCCTTGTACCTGGCTGCCTGGAGGGCAGAGAAGGTCCACAAAGGCTGGAGCAGC
TGGTATTTTCGCTGGAAGGCTGCTTCCAGGACAGCCCTGTGATGCTTCCCAGCCACTCTT
GTCTGCCTTTCCTGCCTTGTGAATATTAAAAGAAAAAAATTTTAATTGAATGAAAGATTC
TTCAAATTCTGTACTGCTTTACAATTTTCTAATGCCTTGTGAGTATTTCCTACAATTTTC
AAATGCCTCATGAGTATTTCCTGGAGGCTGGGAGGCCTCGTCCGAGCTGCTGCTCCCACG
GTCTCCCCCCTGTTGAATGCATGACATGACTCAGCAGTTTATAGGCTGGGAAATGTCAAC
TTTTTAAAAAGAGCTTGAGGGAAAAAGAAAAATCCACGCTTGAGCCTGGGAGGTGCTAAA
AATAGGAACTTCCTAGCTTCCTGAAGAGCAGATCAATGAATAAATAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAATGATGTTTTATATATTAGCCCCCTCCTGTCCTCACACAGGCATGAGGAAGATTA
ATGCCCTGGAAATCTTCTATGGTCTAGCACTGTATTATTATTGTTATTATGAAGATTATC
CTAGAGTTTCCATTTTTGGAGGTGGCTGCTATAATGAGGGTAACTGGTGTGGATATTTCA
GAAAGATTTCACAAATGATGAAGCTATAATTAGCCACTTAGACTGGGCAGTAGCTTTTCC
AAATGCCAGGTGGTGGTGGGAATCTCTAGTTATCATTCCTGCACCATTGACAGAGAAACT
GAGACCCAGAGAATTCAAAGACCCACTCAAGTCCTTGGCGTGAGTGAGCATTAGACAGCT
CTGGAGCCCAGCACCCCAGCTGAAATGACTGTCCTCAAATATGTTAACAGGATTAGAATG
GGGGGTTCAGGGAGTTCCCAGGGGGCATGGGTTAAGGATGGGCTCAGCTCACTGCTGCAG
CTCAGGTTTGATCCCTGGCCCGGGAACTTCCACATGCCACAAGTGTGGCCAAAAATAAAT
AAACACATTTATTAATTCAATAAAACAGAATGGGTGTTCATGCACAGCTCACCTGTGCCA
CATTTTTCAGTGAGTGGCTTGCACACTACCATTTGGTCCAATGCGCTTGGCAGATGCAAA
CACAAGGAAAAGGCTCCAGAATGCATGCTTTTTTTCTGGAAGTGGAAAGAGAATGAGTGG
AGGCAGCCCTTGTACCTGGCTGCCTGGAGGGCAGAGAAGGTCCACAAAGGCTGGAGCAGC
TGGTATTTTCGCTGGAAGGCTGCTTCCAGGACAGCCCTGTGATGCTTCCCAGCCACTCTT
GTCTGCCTTTCCTGCCTTGTGAATATTAAAAGAAAAAAATTTTAATTGAATGAAAGATTC
TTCAAATTCTGTACTGCTTTACAATTTTCTAATGCCTTGTGAGTATTTCCTACAATTTTC
AAATGCCTCATGAGTATTTCCTGGAGGCTGGGAGGCCTCGTCCGAGCTGCTGCTCCCACG
GTCTCCCCCCTGTTGAATGCATGACATGACTCAGCAGTTTATAGGCTGGGAAATGTCAAC
TTTTTAAAAAGAGCTTGAGGGAAAAAGAAAAATCCACGCTTGAGCCTGGGAGGTGCTAAA
AATAGGAACTTCCTAGCTTCCTGAAGAGCAGATCAATGAATAAATAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1067-1186, + strand, RNAz p=0.662477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1067-1186, + strand, RNAz p=0.662477

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               6-250, gnl|bosTau2|chr20 (38134422-38134177)
               

               
               6-250, gnl|Hg17|chr5 (10532063-10532308)
               


               
               264-427, gnl|bosTau2|chr20 (38133837-38133675)
               


               
               567-923, gnl|bosTau2|chr20 (38133687-38133312)
               

               
               567-923, gnl|Hg17|chr5 (10532487-10532815)
               


               
               1029-1188, gnl|bosTau2|chr20 (38132942-38132787)
               

               
               1029-1188, gnl|Hg17|chr5 (10533118-10533272)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-250, gnl|bosTau2|chr20 (38134422-38134177)
               

               
               6-250, gnl|Hg17|chr5 (10532063-10532308)
               


               
               264-427, gnl|bosTau2|chr20 (38133837-38133675)
               


               
               567-923, gnl|bosTau2|chr20 (38133687-38133312)
               

               
               567-923, gnl|Hg17|chr5 (10532487-10532815)
               


               
               1029-1188, gnl|bosTau2|chr20 (38132942-38132787)
               

               
               1029-1188, gnl|Hg17|chr5 (10533118-10533272)

	6-250, gnl\|bosTau2\|chr20 (38134422-38134177)
	6-250, gnl\|Hg17\|chr5 (10532063-10532308)

	264-427, gnl\|bosTau2\|chr20 (38133837-38133675)

	567-923, gnl\|bosTau2\|chr20 (38133687-38133312)
	567-923, gnl\|Hg17\|chr5 (10532487-10532815)

	1029-1188, gnl\|bosTau2\|chr20 (38132942-38132787)
	1029-1188, gnl\|Hg17\|chr5 (10533118-10533272)