Non-Coding RNA Search

Ss1.1-Pig4-TMW8060D07.5

Sequence:


               
               CTGGGGCCAGCAGCCGCCCGACCAGGGGCCCGGGGCCGCGGGCTCAGCCGACTACCATGG
GCTCTGTGTCAAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGCCGGAGGAGGCGCCGG
AGGACGCGGCCCGAGCAGCCGAGGAGCCGCAGCTGCTCCACGGTGCCGGCATCTGTAAAT
GGTTCAACGTGCGCATGGGGTTCGGCTTCCTGTCCATGACCGCCCGCGCCGGGGTCGCGC
TCGACCCCCCAGTGGACGTCTTTGTGCACCAGAGTAAGCTGCACATGGAGGGCTTCCGGA
GCCTGAAGGAGGGTGAGGCTGTGGAGTTCACCTTTAAGAAGTCTGCTAAGGGCTTGGAAT
CTATCCGAGTCACTGGCCCTGGTGGGGTGTTCTGCATTGGGAGCGAGAGACGGCCCAAGG
GGAAGAATATGCAGAAACGCAGATCCAAGGGAGACAGGTGCTACAACTGTGGAGGTCTAG
ACCATCATGCCAAGGAATGCAAACTGCCACCCCAGCCCAAGAAGTGCCACTTCTGCCAGA
GCATCAACCATATGGTGGCTGCGTGTCCACTGAAGGCCCAGCAAGCTCCCAGCTCACAGG
GAAAGCCAGCCTACTTTCGGGAAGAAGAAGAAGAGATCCATAGCCCTGCCATGCTCCCAG
AGGCTCAGAATTGAGCCGTGGTGGGCGGGGGCTATCCTTTTGTGATCAGGAAGTTTTGAG
GAGCAGGCATCAATCGGCAGAGTGGAGAAAGTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCCAGCAGCCGCCCGACCAGGGGCCCGGGGCCGCGGGCTCAGCCGACTACCATGG
GCTCTGTGTCAAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGCCGGAGGAGGCGCCGG
AGGACGCGGCCCGAGCAGCCGAGGAGCCGCAGCTGCTCCACGGTGCCGGCATCTGTAAAT
GGTTCAACGTGCGCATGGGGTTCGGCTTCCTGTCCATGACCGCCCGCGCCGGGGTCGCGC
TCGACCCCCCAGTGGACGTCTTTGTGCACCAGAGTAAGCTGCACATGGAGGGCTTCCGGA
GCCTGAAGGAGGGTGAGGCTGTGGAGTTCACCTTTAAGAAGTCTGCTAAGGGCTTGGAAT
CTATCCGAGTCACTGGCCCTGGTGGGGTGTTCTGCATTGGGAGCGAGAGACGGCCCAAGG
GGAAGAATATGCAGAAACGCAGATCCAAGGGAGACAGGTGCTACAACTGTGGAGGTCTAG
ACCATCATGCCAAGGAATGCAAACTGCCACCCCAGCCCAAGAAGTGCCACTTCTGCCAGA
GCATCAACCATATGGTGGCTGCGTGTCCACTGAAGGCCCAGCAAGCTCCCAGCTCACAGG
GAAAGCCAGCCTACTTTCGGGAAGAAGAAGAAGAGATCCATAGCCCTGCCATGCTCCCAG
AGGCTCAGAATTGAGCCGTGGTGGGCGGGGGCTATCCTTTTGTGATCAGGAAGTTTTGAG
GAGCAGGCATCAATCGGCAGAGTGGAGAAAGTGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K3Y3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K3Y3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               639-755, + strand, RNAz p=0.505543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-755, + strand, RNAz p=0.505543

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-755, gnl|bosTau2|chr26 (27931480-27932223)
               

               
               1-755, gnl|Hg17|chr2 (183950820-183951571)
               

               
               1-755, gnl|Mm7|chr4 (133397230-133384458)
               


               
               270-459, gnl|bosTau2|chr24 (31453622-31453433)
               

               
               270-459, gnl|Hg17|chr6 (105580863-105581052)
               

               
               270-459, gnl|Mm7|chr10 (45232903-45232714)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr26 (27931480-27932223)
               

               
               1-755, gnl|Hg17|chr2 (183950820-183951571)
               

               
               1-755, gnl|Mm7|chr4 (133397230-133384458)
               


               
               270-459, gnl|bosTau2|chr24 (31453622-31453433)
               

               
               270-459, gnl|Hg17|chr6 (105580863-105581052)
               

               
               270-459, gnl|Mm7|chr10 (45232903-45232714)

	1-755, gnl\|bosTau2\|chr26 (27931480-27932223)
	1-755, gnl\|Hg17\|chr2 (183950820-183951571)
	1-755, gnl\|Mm7\|chr4 (133397230-133384458)

	270-459, gnl\|bosTau2\|chr24 (31453622-31453433)
	270-459, gnl\|Hg17\|chr6 (105580863-105581052)
	270-459, gnl\|Mm7\|chr10 (45232903-45232714)