Non-Coding RNA Search

Ss1.1-Pig4-TMW8060D24.3

Sequence:


               
               CCCATGCACCCTCCAGACAGGCAGGCACAGGTTAGAAGTATGACGCCCTCGTTCCCCAGC
CTTTTCTCAAGGCAGCAGCAGTGACAGCCAGGGGCAGAAGCACATTCCTCACACTTTGCC
CTCAACTAAGAGACTGTAGGGGGGAAAACTGCAATAAAACCTCGACCCTCCCTCCAGAGA
TTTTTAAATCCCATTTTTATTCCATGATAAATCGTCTTTTAGGAGGTTGGACAAGCTGCA
TTTCAGAAATGCTGTCATAATGGTTTTTAACACCTTTTACTCTTCTTACTGGTGCTATTT
TGTAGAATAAGGAACAGGTTTTGACAGGTTTTGTGGGAGTTTTTTTATACACTTTTTAAA
ACAAATCTCAGACATCTATTTTTGTTTTAAGATTTTCATAAAAATTTTTTTTGTAACTGG
AGCCACATAACAAGTTTGGGGGAAAATTGTGCCTTGTTTCAACAGTTTTGCTAATTTTTA
GGCTGAAAGATGACAGATGCCTAGAGTTTACCTTATGTTGAATTAAAATCATATTTCTCT
AAAAAAAAAAAAAAAAAAAAACTCCAGTCGCGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGCACCCTCCAGACAGGCAGGCACAGGTTAGAAGTATGACGCCCTCGTTCCCCAGC
CTTTTCTCAAGGCAGCAGCAGTGACAGCCAGGGGCAGAAGCACATTCCTCACACTTTGCC
CTCAACTAAGAGACTGTAGGGGGGAAAACTGCAATAAAACCTCGACCCTCCCTCCAGAGA
TTTTTAAATCCCATTTTTATTCCATGATAAATCGTCTTTTAGGAGGTTGGACAAGCTGCA
TTTCAGAAATGCTGTCATAATGGTTTTTAACACCTTTTACTCTTCTTACTGGTGCTATTT
TGTAGAATAAGGAACAGGTTTTGACAGGTTTTGTGGGAGTTTTTTTATACACTTTTTAAA
ACAAATCTCAGACATCTATTTTTGTTTTAAGATTTTCATAAAAATTTTTTTTGTAACTGG
AGCCACATAACAAGTTTGGGGGAAAATTGTGCCTTGTTTCAACAGTTTTGCTAATTTTTA
GGCTGAAAGATGACAGATGCCTAGAGTTTACCTTATGTTGAATTAAAATCATATTTCTCT
AAAAAAAAAAAAAAAAAAAAACTCCAGTCGCGATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-256, - strand, RNAz p=0.982031

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-256, - strand, RNAz p=0.982031

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               85-545, gnl|bosTau2|chr13 (46897955-46898429)
               

               
               85-545, gnl|Hg17|chr20 (30860367-30860829)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-545, gnl|bosTau2|chr13 (46897955-46898429)
               

               
               85-545, gnl|Hg17|chr20 (30860367-30860829)

	85-545, gnl\|bosTau2\|chr13 (46897955-46898429)
	85-545, gnl\|Hg17\|chr20 (30860367-30860829)