Non-Coding RNA Search

Ss1.1-Pig4-TMW8060E13.3

Sequence:


               
               CTGCCCTGAGCCCAGCACTCCTGGCTCGCCGCCTCCTGAGGATGGGGCTAGGACTGGGCC
CCCAGAGCCCGCGAACCAGGCCGAAGCTGCCAGCACTGGAGAGCCCCCACCAGGGGCAGG
AGGCCTGGCCTTGCCCTGGGAGCCCCATAGCCTGGAGATGGTGCTTATCGGCTGCCACGG
CTCTGGAACAGTCCAGTGGACCCAGGAAGAAGGCACAGGGGTTTGACCGCCAGCCCCAGA
ACTCAGTGTTGCCCAACATGCTGCCATCCGCTGCTCTGCCCAACCTCAGGGTAGAGGAAG
GGTGGCGGCCACCCCCAGGGACTCCGTGCTGCCCGCTGGCTCAGGGCAGGGAGCCTGAGA
GTAAAAGAGGGCCTGGCCCCAGACTCTCAGAGGCTGGGCTGGACGTTCAGGGGCAGGCCC
CAGACCAGGGATCTTTGAGCTCCTACTCCTGGGGCCCTTCCTCACCTCAGCCTGCTCATC
TGACCGCCTCTGCAGGCTGGGGACAGAGGCCCGAGGCCAAGGAGGGGTTCTGCCACCCCC
TGCATGTGCCCCTGCCTCAACTGTCCCCACATTTTTTTATATTAAAAAAAGAATAAAAGA
GACTACTTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCTGAGCCCAGCACTCCTGGCTCGCCGCCTCCTGAGGATGGGGCTAGGACTGGGCC
CCCAGAGCCCGCGAACCAGGCCGAAGCTGCCAGCACTGGAGAGCCCCCACCAGGGGCAGG
AGGCCTGGCCTTGCCCTGGGAGCCCCATAGCCTGGAGATGGTGCTTATCGGCTGCCACGG
CTCTGGAACAGTCCAGTGGACCCAGGAAGAAGGCACAGGGGTTTGACCGCCAGCCCCAGA
ACTCAGTGTTGCCCAACATGCTGCCATCCGCTGCTCTGCCCAACCTCAGGGTAGAGGAAG
GGTGGCGGCCACCCCCAGGGACTCCGTGCTGCCCGCTGGCTCAGGGCAGGGAGCCTGAGA
GTAAAAGAGGGCCTGGCCCCAGACTCTCAGAGGCTGGGCTGGACGTTCAGGGGCAGGCCC
CAGACCAGGGATCTTTGAGCTCCTACTCCTGGGGCCCTTCCTCACCTCAGCCTGCTCATC
TGACCGCCTCTGCAGGCTGGGGACAGAGGCCCGAGGCCAAGGAGGGGTTCTGCCACCCCC
TGCATGTGCCCCTGCCTCAACTGTCCCCACATTTTTTTATATTAAAAAAAGAATAAAAGA
GACTACTTTAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-156, - strand, RNAz p=0.963341
               

               
               351-610, - strand, RNAz p=0.998228

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.963341
               

               
               351-610, - strand, RNAz p=0.998228

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               437-558, + strand, RNAmicro p=0.999999
               

               
               26-170, - strand, RNAmicro p=0.999106
               

               
               438-603, - strand, RNAmicro p=0.998484

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               437-558, + strand, RNAmicro p=0.999999
               

               
               26-170, - strand, RNAmicro p=0.999106
               

               
               438-603, - strand, RNAmicro p=0.998484

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               406-565, 963730 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774927.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-485, BovGen_13985 normal cattle brain Bos taurus cDNA clone 
(gb|CO885660.1|), blast E-value=3e-19, identity=91.25% 
               

               
               406-565, BovGen_14944 normal cattle brain Bos taurus cDNA clone 
(gb|CO886619.1|), blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1153552 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN274532.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1160656 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN279607.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1162576 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN281385.1|), 
blast E-value=2e-32, identity=85.88%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               406-565, 963730 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774927.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-485, BovGen_13985 normal cattle brain Bos taurus cDNA clone 
(gb|CO885660.1|), blast E-value=3e-19, identity=91.25% 
               

               
               406-565, BovGen_14944 normal cattle brain Bos taurus cDNA clone 
(gb|CO886619.1|), blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1153552 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN274532.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1160656 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN279607.1|), 
blast E-value=2e-32, identity=85.88% 
               

               
               406-565, 1162576 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN281385.1|), 
blast E-value=2e-32, identity=85.88%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr5 (21822008-21821385)
               

               
               1-612, gnl|Hg17|chr12 (48237775-48238357)
               

               
               1-612, gnl|Mm7|chr15 (99227539-99228070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr5 (21822008-21821385)
               

               
               1-612, gnl|Hg17|chr12 (48237775-48238357)
               

               
               1-612, gnl|Mm7|chr15 (99227539-99228070)

	1-156, - strand, RNAz p=0.963341
	351-610, - strand, RNAz p=0.998228

	437-558, + strand, RNAmicro p=0.999999
	26-170, - strand, RNAmicro p=0.999106
	438-603, - strand, RNAmicro p=0.998484

	406-565, 963730 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK774927.1\|), blast E-value=2e-32, identity=85.88%
	406-485, BovGen_13985 normal cattle brain Bos taurus cDNA clone (gb\|CO885660.1\|), blast E-value=3e-19, identity=91.25%
	406-565, BovGen_14944 normal cattle brain Bos taurus cDNA clone (gb\|CO886619.1\|), blast E-value=2e-32, identity=85.88%
	406-565, 1153552 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN274532.1\|), blast E-value=2e-32, identity=85.88%
	406-565, 1160656 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN279607.1\|), blast E-value=2e-32, identity=85.88%
	406-565, 1162576 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN281385.1\|), blast E-value=2e-32, identity=85.88%

	1-612, gnl\|bosTau2\|chr5 (21822008-21821385)
	1-612, gnl\|Hg17\|chr12 (48237775-48238357)
	1-612, gnl\|Mm7\|chr15 (99227539-99228070)