Ss1.1-Pig4-TMW8060E18.3
|
ACAGAGATGCAGATAGATCCTTGGATATTTTTGATGAGCGATCACATCCACTCACACGAG
AAAAGGTTCCTGAGGAATACTTTAAGCATGATCCTGAACACAAATTCATTTACAGATTTG
TTCGTACTCTTTTCAGTGCTGCACAGTTAACAGCTGAATGTGCAATAGTAACTTTGGTTT
ACTTAGAAAGGCTTTTAACTTATGCTGAGATCGACATTTGTCCCACTAACTGGAAAAGAA
TTGTTTTGGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATG
TGGACTACTGCCAAATCCTCAAGGACATTACAGTTGAGGACATGAATGAGATGGAAAGGC
ACTTTCTGGAGCTACTTCAGTTTAATATTAATGTTCCTTCCAGTGTTTATGCCAAATACT
ACTTTGACCTTCGCTCCTTAGCAGATGACAACAACGTGAATTTTCTGTTTGCTCCTCTTA
GCAAAGAAAGAGCACAGAACCTAGAGGCCATTTCCAGATTGTGTGAGGACAAATACAAAG
ACTTGTGCAGAGCTGCCATGAGACGGTCTTTCAGCGCTGATAATTTCATTGGTATTCAGC
GCTCCAACGCCATCCTCTTTTAAGGGAGAAGTGAGGGGTTGTAACATCATCAGCCCCTCA
TAACAAGGACTGGAGAAATATCACCTCTCCTGCTCAGAAACCAGCAAAGTTAGTATTTTC
ACCTGAAAGAAAAATGTTGAATTCAAAAGACTCAAGGACAGCGAGGATTATGCTCCTAGG
AAAGAATGCAATGCATCCCTGTCAATGCAAAACACACTTCTGTCCTTTTTAATATAAACA
GAGTTACAAAAACCACTCCAAAGCTAAAAGCTCCCAACCAACACACAGGCATTTGCTTAC
TGTGTAGGGTGATAGCTGTGAACTATGTGGTTTTTTAATAGTTTAAATTTTTAGATTTTA
AAAGACACTAACTATATAACTTCTATGTTTTTCCTATTTTTCTTGCCCCCCCCCCCCCCA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACAGAGATGCAGATAGATCCTTGGATATTTTTGATGAGCGATCACATCCACTCACACGAG
AAAAGGTTCCTGAGGAATACTTTAAGCATGATCCTGAACACAAATTCATTTACAGATTTG
TTCGTACTCTTTTCAGTGCTGCACAGTTAACAGCTGAATGTGCAATAGTAACTTTGGTTT
ACTTAGAAAGGCTTTTAACTTATGCTGAGATCGACATTTGTCCCACTAACTGGAAAAGAA
TTGTTTTGGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATG
TGGACTACTGCCAAATCCTCAAGGACATTACAGTTGAGGACATGAATGAGATGGAAAGGC
ACTTTCTGGAGCTACTTCAGTTTAATATTAATGTTCCTTCCAGTGTTTATGCCAAATACT
ACTTTGACCTTCGCTCCTTAGCAGATGACAACAACGTGAATTTTCTGTTTGCTCCTCTTA
GCAAAGAAAGAGCACAGAACCTAGAGGCCATTTCCAGATTGTGTGAGGACAAATACAAAG
ACTTGTGCAGAGCTGCCATGAGACGGTCTTTCAGCGCTGATAATTTCATTGGTATTCAGC
GCTCCAACGCCATCCTCTTTTAAGGGAGAAGTGAGGGGTTGTAACATCATCAGCCCCTCA
TAACAAGGACTGGAGAAATATCACCTCTCCTGCTCAGAAACCAGCAAAGTTAGTATTTTC
ACCTGAAAGAAAAATGTTGAATTCAAAAGACTCAAGGACAGCGAGGATTATGCTCCTAGG
AAAGAATGCAATGCATCCCTGTCAATGCAAAACACACTTCTGTCCTTTTTAATATAAACA
GAGTTACAAAAACCACTCCAAAGCTAAAAGCTCCCAACCAACACACAGGCATTTGCTTAC
TGTGTAGGGTGATAGCTGTGAACTATGTGGTTTTTTAATAGTTTAAATTTTTAGATTTTA
AAAGACACTAACTATATAACTTCTATGTTTTTCCTATTTTTCTTGCCCCCCCCCCCCCCA |
|
gi|22749085|ref|NP_689736.1| |
Protein identifier
|
gi|22749085|ref|NP_689736.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
176-344, gnl|bosTau2|chr13 (9060610-9060778) |
|
176-344, gnl|canFam2|chr2 (4410816-4410696) |
|
176-344, gnl|danRer3|chr24 (3656296-3656413) |
|
176-344, gnl|dasNov1|scaffold_39342 (10299-10180) |
|
176-344, gnl|echTel1|scaffold_284823 (43261-43141) |
|
176-344, gnl|fr1|chrUn (50487609-50487724) |
|
176-344, gnl|galGal2|chr2 (12225979-12225859) |
|
176-344, gnl|hg17|chr10 (35881938-35882058) |
|
176-344, gnl|Hg17|chr10 (35881952-35882120) |
|
176-344, gnl|loxAfr1|scaffold_20092 (4544-4424) |
|
176-344, gnl|mm7|chr18 (9536726-9536599) |
|
176-344, gnl|Mm7|chr18 (9536703-9536535) |
|
176-344, gnl|monDom2|scaffold_7 (32585246-32585126) |
|
176-344, gnl|panTro1|chr8 (36385138-36385258) |
|
176-344, gnl|rheMac2|chr9 (35757308-35757428) |
|
176-344, gnl|rn3|chr17 (66076719-66076599) |
|
176-344, gnl|tetNig1|chrUn_random (133580803-133580923) |
|
176-344, gnl|xenTro1|scaffold_137 (1229471-1229353) |
| |
|
505-1008, gnl|bosTau2|chr2 (62158719-62158224) |
|
505-1008, gnl|Hg17|chr2 (208443816-208444326) |
|
505-1008, gnl|Mm7|chr1 (64965249-64965873) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
176-344, gnl|bosTau2|chr13 (9060610-9060778) |
|
176-344, gnl|canFam2|chr2 (4410816-4410696) |
|
176-344, gnl|danRer3|chr24 (3656296-3656413) |
|
176-344, gnl|dasNov1|scaffold_39342 (10299-10180) |
|
176-344, gnl|echTel1|scaffold_284823 (43261-43141) |
|
176-344, gnl|fr1|chrUn (50487609-50487724) |
|
176-344, gnl|galGal2|chr2 (12225979-12225859) |
|
176-344, gnl|hg17|chr10 (35881938-35882058) |
|
176-344, gnl|Hg17|chr10 (35881952-35882120) |
|
176-344, gnl|loxAfr1|scaffold_20092 (4544-4424) |
|
176-344, gnl|mm7|chr18 (9536726-9536599) |
|
176-344, gnl|Mm7|chr18 (9536703-9536535) |
|
176-344, gnl|monDom2|scaffold_7 (32585246-32585126) |
|
176-344, gnl|panTro1|chr8 (36385138-36385258) |
|
176-344, gnl|rheMac2|chr9 (35757308-35757428) |
|
176-344, gnl|rn3|chr17 (66076719-66076599) |
|
176-344, gnl|tetNig1|chrUn_random (133580803-133580923) |
|
176-344, gnl|xenTro1|scaffold_137 (1229471-1229353) |
| |
|
505-1008, gnl|bosTau2|chr2 (62158719-62158224) |
|
505-1008, gnl|Hg17|chr2 (208443816-208444326) |
|
505-1008, gnl|Mm7|chr1 (64965249-64965873) |
