Ss1.1-Pig4-TMW8060G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTATGAAGAGAAGCTCAATGGGAATCTCAGGCCTCATGGAGACAACAGGACTGCTGG AAGGCCAGGCAAAGAAAATATCAACGATGAGCCTGTGGATATGAGTGCTAGACGGAGTGA GCCAGACCGAGGAAGGCTAACTCCCTCTCCAGACATCATTGTTTTGTCTGATAATGAGGC TTCCAGTCCCCGTTCCAGCTCCCGAATGGAAGAAAGACTCAAAGCAGCGAACCTAGAGAT GTTTAAGGGGAAAGGCATTGAGGAACGGCAGCAGCTCATCAAGCAGCTGAGGGATGAGCT GCGATTGGAAGAAGCCCGACTGGTGCTGTTAAAGAAACTGAGACAGAGTCAGCTACAAAA AGAAAATGTAGTCCAGAAGACTCCAGTTGTACAGAATGCAGCGTCTATTGTGCAGCCATC TCCTGCCCATGTGGGACAACAAGGCCTGTCCAAGCTTCCCTCCCGGCCTGGGGCCCAAGG GGTTGAACCTCAGAATTTGAGAACATTACAGGGTCACAGTGTCATCCGTTCAGCGACCAA CACCACCCTCCCACACATGTTGATGTCTCAGCGTGTGATTGCACCAAACCCAGCCCAGCT ACAGGGTCAGCGGGGCCCACCTAAGCCTGGCCTTGTACGCACTACAACACCCAATATGAA TCCTGCTATCAATTACCAGCCGCAGTCAAGTTCTTCTGTTCCCTGTCAGCGCACAACATC CTCTGCCATCTATATGAACCTTGCCTCCCATATCCAGCCAGGGACCGTGAACAGAGTGTC CTCACCACTTCCTAGCCCCAGCGCCATGACTGATGCTGCCAACTCACAGGCTGCAGCCAA ATTGGCTCTTCGCAAACAGCTGGAAAAGACACTCCTGGAGATTCCACCCCCTAAACCACC TGCTCCCTTGCTTCATTTCCTGCCTAGTGCAGCCAATAGCGAGTTCATCTACATGGTAGG CTTGGAAGAAGTTGTACAGAGTGTCATCGACAGCCAAGGTAAAGCTGTTTTTTTCTGCTC AATCTTTTTATCTGAGTAGGCAGTTGCCACACCTGATTGATACAGGCAGAGTATCACAGG GCACTATGTAATACTGAATAATCTCTCCTTACTATTGCCAGACTATGTCCCATCCCTTAT TCAGAGGCTCTTTGGGAGCACCATATCAAAAAGCTTTTTGTGTGTGTGTATATCTTAGGC TTAATGTTTTTATTGTGTGTATAGTGTAGCTTATCTATTTTTTGCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTATGAAGAGAAGCTCAATGGGAATCTCAGGCCTCATGGAGACAACAGGACTGCTGG AAGGCCAGGCAAAGAAAATATCAACGATGAGCCTGTGGATATGAGTGCTAGACGGAGTGA GCCAGACCGAGGAAGGCTAACTCCCTCTCCAGACATCATTGTTTTGTCTGATAATGAGGC TTCCAGTCCCCGTTCCAGCTCCCGAATGGAAGAAAGACTCAAAGCAGCGAACCTAGAGAT GTTTAAGGGGAAAGGCATTGAGGAACGGCAGCAGCTCATCAAGCAGCTGAGGGATGAGCT GCGATTGGAAGAAGCCCGACTGGTGCTGTTAAAGAAACTGAGACAGAGTCAGCTACAAAA AGAAAATGTAGTCCAGAAGACTCCAGTTGTACAGAATGCAGCGTCTATTGTGCAGCCATC TCCTGCCCATGTGGGACAACAAGGCCTGTCCAAGCTTCCCTCCCGGCCTGGGGCCCAAGG GGTTGAACCTCAGAATTTGAGAACATTACAGGGTCACAGTGTCATCCGTTCAGCGACCAA CACCACCCTCCCACACATGTTGATGTCTCAGCGTGTGATTGCACCAAACCCAGCCCAGCT ACAGGGTCAGCGGGGCCCACCTAAGCCTGGCCTTGTACGCACTACAACACCCAATATGAA TCCTGCTATCAATTACCAGCCGCAGTCAAGTTCTTCTGTTCCCTGTCAGCGCACAACATC CTCTGCCATCTATATGAACCTTGCCTCCCATATCCAGCCAGGGACCGTGAACAGAGTGTC CTCACCACTTCCTAGCCCCAGCGCCATGACTGATGCTGCCAACTCACAGGCTGCAGCCAA ATTGGCTCTTCGCAAACAGCTGGAAAAGACACTCCTGGAGATTCCACCCCCTAAACCACC TGCTCCCTTGCTTCATTTCCTGCCTAGTGCAGCCAATAGCGAGTTCATCTACATGGTAGG CTTGGAAGAAGTTGTACAGAGTGTCATCGACAGCCAAGGTAAAGCTGTTTTTTTCTGCTC AATCTTTTTATCTGAGTAGGCAGTTGCCACACCTGATTGATACAGGCAGAGTATCACAGG GCACTATGTAATACTGAATAATCTCTCCTTACTATTGCCAGACTATGTCCCATCCCTTAT TCAGAGGCTCTTTGGGAGCACCATATCAAAAAGCTTTTTGTGTGTGTGTATATCTTAGGC TTAATGTTTTTATTGTGTGTATAGTGTAGCTTATCTATTTTTTGCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 116-253, - strand, RNAz p=0.947132 | |
| 817-936, - strand, RNAz p=0.96712 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 116-253, - strand, RNAz p=0.947132 | |
| 817-936, - strand, RNAz p=0.96712 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 116-253, gnl|bosTau2|chr3 (8038347-8038210) | |
| 116-253, gnl|Hg17|chr1 (150605286-150605149) | |
| 116-253, gnl|Mm7|chr3 (90479300-90479437) | |
| 378-512, gnl|bosTau2|chr3 (8037194-8037063) | |
| 378-512, gnl|canFam2|chr7 (46261029-46260852) | |
| 378-512, gnl|danRer3|chr19 (57931072-57930919) | |
| 378-512, gnl|echTel1|scaffold_297408 (48843-49029) | |
| 378-512, gnl|fr1|chrUn (152150820-152150685) | |
| 378-512, gnl|galGal2|chrUn (135848128-135847948) | |
| 378-512, gnl|hg17|chr1 (150603566-150603751) | |
| 378-512, gnl|Hg17|chr1 (150603722-150603588) | |
| 378-512, gnl|loxAfr1|scaffold_2219 (144526-144712) | |
| 378-512, gnl|mm7|chr3 (90481278-90481093) | |
| 378-512, gnl|Mm7|chr3 (90481120-90481254) | |
| 378-512, gnl|monDom2|scaffold_59 (4250975-4250793) | |
| 378-512, gnl|panTro1|chr1 (132583355-132583540) | |
| 378-512, gnl|rheMac2|chr1 (132333850-132334041) | |
| 378-512, gnl|rn3|chr2 (182556287-182556102) | |
| 378-512, gnl|tetNig1|chrUn_random (109923177-109923330) | |
| 378-512, gnl|xenTro1|scaffold_1238 (216436-216272) | |
| 657-1179, gnl|bosTau2|chr3 (8035751-8035232) | |
| 657-1179, gnl|Hg17|chr1 (150602162-150601656) | |
| 657-1179, gnl|Mm7|chr3 (90482529-90482964) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-253, gnl|bosTau2|chr3 (8038347-8038210) | |
| 116-253, gnl|Hg17|chr1 (150605286-150605149) | |
| 116-253, gnl|Mm7|chr3 (90479300-90479437) | |
| 378-512, gnl|bosTau2|chr3 (8037194-8037063) | |
| 378-512, gnl|canFam2|chr7 (46261029-46260852) | |
| 378-512, gnl|danRer3|chr19 (57931072-57930919) | |
| 378-512, gnl|echTel1|scaffold_297408 (48843-49029) | |
| 378-512, gnl|fr1|chrUn (152150820-152150685) | |
| 378-512, gnl|galGal2|chrUn (135848128-135847948) | |
| 378-512, gnl|hg17|chr1 (150603566-150603751) | |
| 378-512, gnl|Hg17|chr1 (150603722-150603588) | |
| 378-512, gnl|loxAfr1|scaffold_2219 (144526-144712) | |
| 378-512, gnl|mm7|chr3 (90481278-90481093) | |
| 378-512, gnl|Mm7|chr3 (90481120-90481254) | |
| 378-512, gnl|monDom2|scaffold_59 (4250975-4250793) | |
| 378-512, gnl|panTro1|chr1 (132583355-132583540) | |
| 378-512, gnl|rheMac2|chr1 (132333850-132334041) | |
| 378-512, gnl|rn3|chr2 (182556287-182556102) | |
| 378-512, gnl|tetNig1|chrUn_random (109923177-109923330) | |
| 378-512, gnl|xenTro1|scaffold_1238 (216436-216272) | |
| 657-1179, gnl|bosTau2|chr3 (8035751-8035232) | |
| 657-1179, gnl|Hg17|chr1 (150602162-150601656) | |
| 657-1179, gnl|Mm7|chr3 (90482529-90482964) |