Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H01.3

Sequence:


               
               CAGGAAGGTGGAAGGTCCATGGGAGGTTACAGCTCACACGAGGGCCCGGGGAGGGGGCCC
AGCTGCTGAGTCAGAGGAGCAGAGAGGAGGCTGATGTGGCTGGACTGGAGTGAGGGGAGC
AGGAGGAACGAGGTCAGAGGTCCCAGGTCTTCCTCCCTGACCGGCAGTGAGCTCAGAGTG
GTATCAAGATGACAGTAAGAGAGGGAGAGTGAGAGCAGCAGGCGGACTTACGCAACCCGG
TGGAAAGTGATACAGGCGGACTTGCTGACTGGAAACAAACAGAAAAGGAGCCAGGCAGAG
CTTCCTGGAATCCAGGTCTAGGGGCTGCCAAAAAACGAGGCTCTTCTCTTCGGAACAATT
GAATGTCACTGGGGTAACTGAACACTGCTGGCGAGAGAGGCCTCCTGCCCACAGCCTCAC
AGAGCAGCCTGTGTGAGCGAGGCCGGGCTCCAGAGGAAAAAAGGGCCTGGCGAGGTGCCC
CGTGGGGCCATCTGAGGAGACACTGCCGTCCCTCATGCTGGACCAGCTTCAGCTGTAACT
GGGCCGACAGGCCATAGGCTAGGGGATCCCCAGAGCGAGCCTCAAGCACAGCTAACGAGC
ACAGCTCTAGCCCAGTGGTCAGGCCCTGAACTCGGGAGGCAGGATGCTTGGGTTCCAAGA
TGAGCTTTTCCTGCTGCATAACCCTGGGCATAACCCTCTCATTCTTCTCCTTAAAAGAAA
GGGTAGTGAAATGGGATGGTAGATCAAAATGTGATTCGTACAAAGGAGATAAAAATGTTA
TGACTCAAATAAGATACATTTAGTCACATTTACTTTCATGGTGATAGTTCTAGGCATGGT
CTGTTTTAACTCATTTCATCTTTTTTGAGAATGCTCTGTAGTGAGGACAATTATTATACC
CATTTTACAGAAAAGAAAAGTGAAGCCCTTAGGTGTCAAGTAAATTGACTAAGAGTGTAT
GCTTAGTAAACAGCAGAGTCAGGATTTGAACTCAAGAGAATCTGATTCCAGAGCCTATGA
CCTTAACCACTACCCTGTAATATATATAATTACAGCTTTTCTTTGCACTATTTTTTATAT
CATACTTGATTGGATCCCTGCTTGGGAACATTTAAGTTGTCTCCAGTTTTAACTCTCCAT
GTTGTCAAGCACATCTTCAGTTCTTAAAAATAAATCTTTGGGTGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAAGGTGGAAGGTCCATGGGAGGTTACAGCTCACACGAGGGCCCGGGGAGGGGGCCC
AGCTGCTGAGTCAGAGGAGCAGAGAGGAGGCTGATGTGGCTGGACTGGAGTGAGGGGAGC
AGGAGGAACGAGGTCAGAGGTCCCAGGTCTTCCTCCCTGACCGGCAGTGAGCTCAGAGTG
GTATCAAGATGACAGTAAGAGAGGGAGAGTGAGAGCAGCAGGCGGACTTACGCAACCCGG
TGGAAAGTGATACAGGCGGACTTGCTGACTGGAAACAAACAGAAAAGGAGCCAGGCAGAG
CTTCCTGGAATCCAGGTCTAGGGGCTGCCAAAAAACGAGGCTCTTCTCTTCGGAACAATT
GAATGTCACTGGGGTAACTGAACACTGCTGGCGAGAGAGGCCTCCTGCCCACAGCCTCAC
AGAGCAGCCTGTGTGAGCGAGGCCGGGCTCCAGAGGAAAAAAGGGCCTGGCGAGGTGCCC
CGTGGGGCCATCTGAGGAGACACTGCCGTCCCTCATGCTGGACCAGCTTCAGCTGTAACT
GGGCCGACAGGCCATAGGCTAGGGGATCCCCAGAGCGAGCCTCAAGCACAGCTAACGAGC
ACAGCTCTAGCCCAGTGGTCAGGCCCTGAACTCGGGAGGCAGGATGCTTGGGTTCCAAGA
TGAGCTTTTCCTGCTGCATAACCCTGGGCATAACCCTCTCATTCTTCTCCTTAAAAGAAA
GGGTAGTGAAATGGGATGGTAGATCAAAATGTGATTCGTACAAAGGAGATAAAAATGTTA
TGACTCAAATAAGATACATTTAGTCACATTTACTTTCATGGTGATAGTTCTAGGCATGGT
CTGTTTTAACTCATTTCATCTTTTTTGAGAATGCTCTGTAGTGAGGACAATTATTATACC
CATTTTACAGAAAAGAAAAGTGAAGCCCTTAGGTGTCAAGTAAATTGACTAAGAGTGTAT
GCTTAGTAAACAGCAGAGTCAGGATTTGAACTCAAGAGAATCTGATTCCAGAGCCTATGA
CCTTAACCACTACCCTGTAATATATATAATTACAGCTTTTCTTTGCACTATTTTTTATAT
CATACTTGATTGGATCCCTGCTTGGGAACATTTAAGTTGTCTCCAGTTTTAACTCTCCAT
GTTGTCAAGCACATCTTCAGTTCTTAAAAATAAATCTTTGGGTGTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               409-515, - strand, RNAz p=0.99035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-515, - strand, RNAz p=0.99035

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               136-617, gnl|bosTau2|chr13 (57938819-57938338)
               

               
               136-617, gnl|Hg17|chr20 (47797778-47798235)
               

               
               136-617, gnl|Mm7|chr2 (167113874-167114327)
               


               
               958-1180, gnl|bosTau2|chr13 (57936130-57935909)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-617, gnl|bosTau2|chr13 (57938819-57938338)
               

               
               136-617, gnl|Hg17|chr20 (47797778-47798235)
               

               
               136-617, gnl|Mm7|chr2 (167113874-167114327)
               


               
               958-1180, gnl|bosTau2|chr13 (57936130-57935909)

	136-617, gnl\|bosTau2\|chr13 (57938819-57938338)
	136-617, gnl\|Hg17\|chr20 (47797778-47798235)
	136-617, gnl\|Mm7\|chr2 (167113874-167114327)

	958-1180, gnl\|bosTau2\|chr13 (57936130-57935909)