Non-Coding RNA Search

Ss1.1-Pig4-TMW8060H16.5

Sequence:


               
               CAGTGGCAGGGTTCCTTCTGCCACCACAGGTGGCATTTCTTCCGTAATCATGAACCCGCC
TCCCAACTACCTGGTGGGCTCCGATGGAGACAGATGAGTTGGAGAGCTGGGTGCTGCGAC
ATCCCATCCCATCGAGGAGTTCTCAGAGGCCAGGCCCATCTCCTCCCTCTCTTCACACTC
TGGAGAACACGCTCCAGGATGTGCGCCTAGTGTGCCTGTCCAGGCGGGCCACTGCTGGAG
GCTTTTGTCTAGGGATCCTCTCCTCCCTGGCCTCCCTCGCCTGCCTCCCTGGACCAGGAG
GAGGGTATGGGCCCCTCTGCCCACCCCCACAGTCAGAGTTGGAGATGGAGCTTGTTGCCA
GGCAGCCTGTTTTGCCTTTAGGCAGGAGAAGCGGGCTTGTGAGGGGGGTATTGTTTCCAC
AGAAGTACCTGCTTTCCAGTCCTGTCCTCCCCTGAGCTGGTGCAGAACCTGGAGCAGAGG
AAGACTACTCAAGGAGGAAAAAAGCCCCCCCAGCCTTTGTTGGAAGAGTCAGGCCAAGGA
TGGTCCTCAGCTGTAGTCCTACAGGCCAGAACTAGCCTCCCAAGGGTGGCCCTGGGAGCA
GGGCTCCCACTGCTCCCCCACCCCCAGTCTCATTTGCGCTAACAAAGACACAATCTCTAT
ATTCCACACTTAGAGGTGACAGCCAACCACAGGTGAATGGGGTGGGTCTACTAAAAAATA
ACCCCTGCCCTCAAGGCTTAATACAAATAAAGGCTTATCTTTCATTCTTGAGGTGGGTGC
AGGGATGGATAGGGCAATGCTCCACACAGTCATTCAGAGACCCAGGCTCTTGCCATCTTG
CGGCTCCTTCTCCTTCAGAGCTTGGAGTCAACTGAATAATCTGCCCCAGGAGGCAGATGA
GGGGAAAGGAGAGTGGGGAGGCCTATCTCTGGCCAGCAGAGCCTGGCTTGGGTCGCCTCC
TCACCAGGTCTTTCCTGGAGATTGAAGCGTCCGTGAGCAGCAGCTCAGCTGTGATCAAGT
GGAGAGAGAGCTGTGGTTTCTGATAGGGACCATCTGCTAAATGCAAAAGAAACAAGCCCC
GCCTCATCTCAGATCATCCCTAACCACGGCCTAGCCACCAGAAGAGAATTTTCCCGAATG
TGATCCCAGAACCCTTACATGAGAGCAAGAGATGTTTGTTGAAGAAGCAGGTTCTGGGGC
CCCATCTCAGACCAACTGAATTGGCATCCCTGGGGTGGGGCTCTGTGATCTTTTGAAACA
AGCTCCCCTGGTGTGAGAACCTCATCACCAGACATTATAGGGAGTTCATGTCTTGTCAGC
TTTGTTCTATCAGCATCTGGCACAGAACCTAGAACCCTCAGAAAGTTTTAACCCTGAATC
TGAATCTTCAAAACCTAATTTTTTTTTATTATGGAAAAATTCCAATATATGCAAAAGTGG
AGAGAAAGTATAATGAACCCCCTCCCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGGCAGGGTTCCTTCTGCCACCACAGGTGGCATTTCTTCCGTAATCATGAACCCGCC
TCCCAACTACCTGGTGGGCTCCGATGGAGACAGATGAGTTGGAGAGCTGGGTGCTGCGAC
ATCCCATCCCATCGAGGAGTTCTCAGAGGCCAGGCCCATCTCCTCCCTCTCTTCACACTC
TGGAGAACACGCTCCAGGATGTGCGCCTAGTGTGCCTGTCCAGGCGGGCCACTGCTGGAG
GCTTTTGTCTAGGGATCCTCTCCTCCCTGGCCTCCCTCGCCTGCCTCCCTGGACCAGGAG
GAGGGTATGGGCCCCTCTGCCCACCCCCACAGTCAGAGTTGGAGATGGAGCTTGTTGCCA
GGCAGCCTGTTTTGCCTTTAGGCAGGAGAAGCGGGCTTGTGAGGGGGGTATTGTTTCCAC
AGAAGTACCTGCTTTCCAGTCCTGTCCTCCCCTGAGCTGGTGCAGAACCTGGAGCAGAGG
AAGACTACTCAAGGAGGAAAAAAGCCCCCCCAGCCTTTGTTGGAAGAGTCAGGCCAAGGA
TGGTCCTCAGCTGTAGTCCTACAGGCCAGAACTAGCCTCCCAAGGGTGGCCCTGGGAGCA
GGGCTCCCACTGCTCCCCCACCCCCAGTCTCATTTGCGCTAACAAAGACACAATCTCTAT
ATTCCACACTTAGAGGTGACAGCCAACCACAGGTGAATGGGGTGGGTCTACTAAAAAATA
ACCCCTGCCCTCAAGGCTTAATACAAATAAAGGCTTATCTTTCATTCTTGAGGTGGGTGC
AGGGATGGATAGGGCAATGCTCCACACAGTCATTCAGAGACCCAGGCTCTTGCCATCTTG
CGGCTCCTTCTCCTTCAGAGCTTGGAGTCAACTGAATAATCTGCCCCAGGAGGCAGATGA
GGGGAAAGGAGAGTGGGGAGGCCTATCTCTGGCCAGCAGAGCCTGGCTTGGGTCGCCTCC
TCACCAGGTCTTTCCTGGAGATTGAAGCGTCCGTGAGCAGCAGCTCAGCTGTGATCAAGT
GGAGAGAGAGCTGTGGTTTCTGATAGGGACCATCTGCTAAATGCAAAAGAAACAAGCCCC
GCCTCATCTCAGATCATCCCTAACCACGGCCTAGCCACCAGAAGAGAATTTTCCCGAATG
TGATCCCAGAACCCTTACATGAGAGCAAGAGATGTTTGTTGAAGAAGCAGGTTCTGGGGC
CCCATCTCAGACCAACTGAATTGGCATCCCTGGGGTGGGGCTCTGTGATCTTTTGAAACA
AGCTCCCCTGGTGTGAGAACCTCATCACCAGACATTATAGGGAGTTCATGTCTTGTCAGC
TTTGTTCTATCAGCATCTGGCACAGAACCTAGAACCCTCAGAAAGTTTTAACCCTGAATC
TGAATCTTCAAAACCTAATTTTTTTTTATTATGGAAAAATTCCAATATATGCAAAAGTGG
AGAGAAAGTATAATGAACCCCCTCCCCCCCCAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               51-144, + strand, RNAz p=0.849012
               

               
               173-469, - strand, RNAz p=0.9629

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-144, + strand, RNAz p=0.849012
               

               
               173-469, - strand, RNAz p=0.9629

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               51-506, gnl|bosTau2|chr23 (9937840-9937374)
               

               
               51-506, gnl|Hg17|chr6 (36827079-36826595)
               


               
               818-1082, gnl|bosTau2|chr23 (9936759-9936488)
               

               
               818-1082, gnl|Hg17|chr6 (36826524-36825953)
               


               
               1271-1462, gnl|bosTau2|chr23 (9936057-9935859)
               

               
               1271-1462, gnl|Hg17|chr6 (36825729-36825534)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-506, gnl|bosTau2|chr23 (9937840-9937374)
               

               
               51-506, gnl|Hg17|chr6 (36827079-36826595)
               


               
               818-1082, gnl|bosTau2|chr23 (9936759-9936488)
               

               
               818-1082, gnl|Hg17|chr6 (36826524-36825953)
               


               
               1271-1462, gnl|bosTau2|chr23 (9936057-9935859)
               

               
               1271-1462, gnl|Hg17|chr6 (36825729-36825534)

	51-144, + strand, RNAz p=0.849012
	173-469, - strand, RNAz p=0.9629

	51-506, gnl\|bosTau2\|chr23 (9937840-9937374)
	51-506, gnl\|Hg17\|chr6 (36827079-36826595)

	818-1082, gnl\|bosTau2\|chr23 (9936759-9936488)
	818-1082, gnl\|Hg17\|chr6 (36826524-36825953)

	1271-1462, gnl\|bosTau2\|chr23 (9936057-9935859)
	1271-1462, gnl\|Hg17\|chr6 (36825729-36825534)