Non-Coding RNA Search

Ss1.1-Pig4-TMW8060L15.5

Sequence:


               
               TTTTCTTTCACTGGGAAAATGGATATGCTGTGTTTTGTTAGGTGGATGTAAGACACCACT
GACACCTTGGCAGAGCCACCTTGGACCAGATTATTTCTAAACTTTGTCAGCGCCTTGGTC
ATTACACCACGCCGACCTGGCTTGTGACATAAACAGCTCACATAAAAAGTTGTCACCAGT
CCCTTGAAAGCAATGAGCATTTTAGAAACCCACCCCAGGATGAGATTCTTTCATGATGCA
CCGGGTCGCCTGTGAGAGGCCCTTGTTTAGTGAGTCCCAGTTCAGAGGCGAAACTGATGA
GACCCTTTTTCGATGGCGCCTCTATGTTTTTCACAGGTGCAGATCTGTCCACATCCTGCT
GAGAAAGATTGATGTGGCTGACCTCTGCTTGGAGCAGTGAATGGGTACCCAGACAGATGC
TGGAGGTCAGGCGGTGGCCTGGGGACTGTGGCCAAGGCAGCTTGGATGCGTGCCTTGGAA
AATACCAGCCACACAGAACCATCTTGGGGGCTGGAGCAAGTGAAAAACAGAAAAAAAAAA
AATGGGGATCTAGGCAATTTCTTGATTGTGTGAGCTCCCTTTGCAGGTTTAGAAATGAAC
TTCCAGTCATCCGTGCTTTTTACAGCAATAATTCATGTGTCTCCACAATTCCCTTGTACT
GCTGTTGTGATAGTCCTTAAGAGTCATGGTGAACTTGGCTGTTGTTTTAAAATGCTAGAC
TGTTATGAAGGCTATTTCTGAATCACCACTGTGGGGAGGAGTTTTCTGTGGGCTGGCAGC
AGGGTTGTGTTTCTCATTGGATAATTAAACTCAGTCCAGGGACTCGACGTTGAATTGTAC
ACTATCACATTCAACATGAAAAGCATGCATAGGTTATCTTTTAGGCACTGTCATGGATTC
TGAAAAGAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTTTCACTGGGAAAATGGATATGCTGTGTTTTGTTAGGTGGATGTAAGACACCACT
GACACCTTGGCAGAGCCACCTTGGACCAGATTATTTCTAAACTTTGTCAGCGCCTTGGTC
ATTACACCACGCCGACCTGGCTTGTGACATAAACAGCTCACATAAAAAGTTGTCACCAGT
CCCTTGAAAGCAATGAGCATTTTAGAAACCCACCCCAGGATGAGATTCTTTCATGATGCA
CCGGGTCGCCTGTGAGAGGCCCTTGTTTAGTGAGTCCCAGTTCAGAGGCGAAACTGATGA
GACCCTTTTTCGATGGCGCCTCTATGTTTTTCACAGGTGCAGATCTGTCCACATCCTGCT
GAGAAAGATTGATGTGGCTGACCTCTGCTTGGAGCAGTGAATGGGTACCCAGACAGATGC
TGGAGGTCAGGCGGTGGCCTGGGGACTGTGGCCAAGGCAGCTTGGATGCGTGCCTTGGAA
AATACCAGCCACACAGAACCATCTTGGGGGCTGGAGCAAGTGAAAAACAGAAAAAAAAAA
AATGGGGATCTAGGCAATTTCTTGATTGTGTGAGCTCCCTTTGCAGGTTTAGAAATGAAC
TTCCAGTCATCCGTGCTTTTTACAGCAATAATTCATGTGTCTCCACAATTCCCTTGTACT
GCTGTTGTGATAGTCCTTAAGAGTCATGGTGAACTTGGCTGTTGTTTTAAAATGCTAGAC
TGTTATGAAGGCTATTTCTGAATCACCACTGTGGGGAGGAGTTTTCTGTGGGCTGGCAGC
AGGGTTGTGTTTCTCATTGGATAATTAAACTCAGTCCAGGGACTCGACGTTGAATTGTAC
ACTATCACATTCAACATGAAAAGCATGCATAGGTTATCTTTTAGGCACTGTCATGGATTC
TGAAAAGAAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               411-530, + strand, RNAz p=0.565035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-530, + strand, RNAz p=0.565035

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-857, gnl|bosTau2|chr29 (1224777-1223950)
               

               
               1-857, gnl|Hg17|chr11 (91789337-91790153)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-857, gnl|bosTau2|chr29 (1224777-1223950)
               

               
               1-857, gnl|Hg17|chr11 (91789337-91790153)

	1-857, gnl\|bosTau2\|chr29 (1224777-1223950)
	1-857, gnl\|Hg17\|chr11 (91789337-91790153)