Non-Coding RNA Search

Ss1.1-Pig4-TMW8060M05.5

Sequence:


               
               AGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAAATATTCAGAGCTC
TCCTCCAAGATTGACTAAACCACAGTCAGTTGCCATAAAGAGAAAGAGGCCTTTTGTACT
AAAGAAGAAAAGGGGTCGGAAACGCAGGAGGATCAACAGCAGTGTAACAACCGAGACCAT
TTCTGAGACGACAGAAGTACTGAATGAGCCCTTTGACAACTCCGACGAAGAGAGGCCAAT
GCCACAGCTGGAGCCTACCTGTGAGATTGAGGTAGAGGAGGACGGCGGGAAGCCAGTCCT
GCGAAAAGCATTCCAACACCAGCCTGGGAAGAAAAGACAGACAGAGGAAGAGGAAGGAAA
AGACAATCATTGCTTTAAGAATGCTGACCCTTGTAGAAACAATATGGATGGTGATGCAAA
TAACTTGAAAGAAGCCAGCAGAGACAATCCTGAACCTCTAAAGTGCAAGCAATGGCCAAA
AGGAGCAAAGCGTGGTCTCTCTAAGTGGAGGCCAAACAAAGAGAGGAAGACTGGATTTAA
ACTGAACTTGTACACCCCACCAGAAACCCCCATGGAACCCGATGACCAGGTAACAGTGGA
AGAACAGAAGGAGACCCCGGAGGACAAAAGCAGCCCCACTCCCACCAGGATTGAGGAAGA
GGTCAAGGAAGCCATGGAACCCCTGCTGCCTCAGGACGAAAACAGAAGGGAGGAAACGTG
TGCCCCTATAAGTCCAAATAAATCACCATGTGAAAAACCAGAAGATGGTATAATCAAACC
TGAGGAGGAAGAGGAGGAGGAAGAAGAAAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAAATATTCAGAGCTC
TCCTCCAAGATTGACTAAACCACAGTCAGTTGCCATAAAGAGAAAGAGGCCTTTTGTACT
AAAGAAGAAAAGGGGTCGGAAACGCAGGAGGATCAACAGCAGTGTAACAACCGAGACCAT
TTCTGAGACGACAGAAGTACTGAATGAGCCCTTTGACAACTCCGACGAAGAGAGGCCAAT
GCCACAGCTGGAGCCTACCTGTGAGATTGAGGTAGAGGAGGACGGCGGGAAGCCAGTCCT
GCGAAAAGCATTCCAACACCAGCCTGGGAAGAAAAGACAGACAGAGGAAGAGGAAGGAAA
AGACAATCATTGCTTTAAGAATGCTGACCCTTGTAGAAACAATATGGATGGTGATGCAAA
TAACTTGAAAGAAGCCAGCAGAGACAATCCTGAACCTCTAAAGTGCAAGCAATGGCCAAA
AGGAGCAAAGCGTGGTCTCTCTAAGTGGAGGCCAAACAAAGAGAGGAAGACTGGATTTAA
ACTGAACTTGTACACCCCACCAGAAACCCCCATGGAACCCGATGACCAGGTAACAGTGGA
AGAACAGAAGGAGACCCCGGAGGACAAAAGCAGCCCCACTCCCACCAGGATTGAGGAAGA
GGTCAAGGAAGCCATGGAACCCCTGCTGCCTCAGGACGAAAACAGAAGGGAGGAAACGTG
TGCCCCTATAAGTCCAAATAAATCACCATGTGAAAAACCAGAAGATGGTATAATCAAACC
TGAGGAGGAAGAGGAGGAGGAAGAAGAAAGAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12718197|emb|CAC28864.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12718197|emb|CAC28864.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-263, - strand, RNAz p=0.602549

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-263, - strand, RNAz p=0.602549

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               105-398, gnl|bosTau2|chr28 (24102877-24102584)
               

               
               105-398, gnl|Hg17|chr10 (76454720-76455013)
               

               
               105-398, gnl|Mm7|chr14 (19323128-19323421)
               


               
               124-282, gnl|bosTau2|chr27 (23304992-23304833)
               

               
               124-282, gnl|Hg17|chr8 (41914227-41914068)
               

               
               124-282, gnl|Mm7|chr8 (21720813-21720975)
               


               
               399-815, gnl|bosTau2|chr28 (24099704-24099289)
               

               
               399-815, gnl|Hg17|chr10 (76458253-76458674)
               

               
               399-815, gnl|Mm7|chr14 (19327004-19327446)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-398, gnl|bosTau2|chr28 (24102877-24102584)
               

               
               105-398, gnl|Hg17|chr10 (76454720-76455013)
               

               
               105-398, gnl|Mm7|chr14 (19323128-19323421)
               


               
               124-282, gnl|bosTau2|chr27 (23304992-23304833)
               

               
               124-282, gnl|Hg17|chr8 (41914227-41914068)
               

               
               124-282, gnl|Mm7|chr8 (21720813-21720975)
               


               
               399-815, gnl|bosTau2|chr28 (24099704-24099289)
               

               
               399-815, gnl|Hg17|chr10 (76458253-76458674)
               

               
               399-815, gnl|Mm7|chr14 (19327004-19327446)

	105-398, gnl\|bosTau2\|chr28 (24102877-24102584)
	105-398, gnl\|Hg17\|chr10 (76454720-76455013)
	105-398, gnl\|Mm7\|chr14 (19323128-19323421)

	124-282, gnl\|bosTau2\|chr27 (23304992-23304833)
	124-282, gnl\|Hg17\|chr8 (41914227-41914068)
	124-282, gnl\|Mm7\|chr8 (21720813-21720975)

	399-815, gnl\|bosTau2\|chr28 (24099704-24099289)
	399-815, gnl\|Hg17\|chr10 (76458253-76458674)
	399-815, gnl\|Mm7\|chr14 (19327004-19327446)