Ss1.1-Pig4-TMW8060M24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTACGCTCCTGCAGTCATTGGCTATCGAGGACAGCCGGGACAAGCCCACCTACAGTGT CCTGCTGGGACAGCTCTTTGCTTTCATCGGCACCAACCCTGACCAAGCTGTGTCCAGCAG CAGCTTTCTTTTGGCCGCACAGACAAGGTGGCGGCGGGGAAACACTCGCAAGCAGGCCCT GGTGCACATGCGGGAGTTGCTGACGGCTGCTGTGCGAGTCGGGGGAGTGACTCATCTTGT GGGTCCAGTGACTATGGTCCTGCAAGGAGGACCCAGAATTGAAGAACTAACTTGTGGTGG GATGGTCGAGCAAGTCCAGGAAGCCTTTGGCGAGACCATGACCTCTGTTGTGTCTTTGTG CGCTCGCTACCCTATTGCGTGTGCAAATAGCATTGGGCTCTTGTGTACCATACCTTACAC CAGGAGTGAAGAGAAGTGCCTGGTACGCAGTGGCCTTGTTCAGCTCATGGATCGACTGTG TAGCTTGAGCATTCAGACCGAGTCCAGCTCCAGTGAGAAACAAACCAAGAAGCAGAAGGT GGCCACCATGGCCTGGGCAGCCTTCCAGGTGCTTGCCAACCGCTGCGTCGAATGGGAAAA AGAAGAAGGTGGCTCCACAGAAGCTGTGCACTCAGGTCTGGCCCGTCAGGTGTCCAGCCT TCTCACTAACCATCTTGCCCGAGCGACTGAATGCTGTGGCAACCAGGCTGCTGGGAACGA TGCTCTCCAGGATGTCTTAAGCCTCCTCAATGATCTCTCAAGAAGTCACATAGGCAAAGC CATCTTAAGCCAGCCAGCCTGTGTGTCCAAACTCCTCTCCTTGCTGCTTGACCAACGCCC ATCCCCAAAGCTGGTTCTTATCATTCTTCAGCTGTGCCGGGCGGCCCTCCCACTCATGAG CGTAGAAGACTGTGGGAACGTGGAGCTCCCACCCTGGAGCTACTCTGTCCCCTCCCTAAA CAGCGAACAAGAGGATCCTAGTGACCCAGCATCCAAGATTGCCTCACTGCTCTTAGCCAA GCTGGCAGATTACGTGGTCCCTGGATGTCAGACAGTCCTTTCTCCAACTGCTTATGAACC GGACACCACATTGACAAAAACCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTACGCTCCTGCAGTCATTGGCTATCGAGGACAGCCGGGACAAGCCCACCTACAGTGT CCTGCTGGGACAGCTCTTTGCTTTCATCGGCACCAACCCTGACCAAGCTGTGTCCAGCAG CAGCTTTCTTTTGGCCGCACAGACAAGGTGGCGGCGGGGAAACACTCGCAAGCAGGCCCT GGTGCACATGCGGGAGTTGCTGACGGCTGCTGTGCGAGTCGGGGGAGTGACTCATCTTGT GGGTCCAGTGACTATGGTCCTGCAAGGAGGACCCAGAATTGAAGAACTAACTTGTGGTGG GATGGTCGAGCAAGTCCAGGAAGCCTTTGGCGAGACCATGACCTCTGTTGTGTCTTTGTG CGCTCGCTACCCTATTGCGTGTGCAAATAGCATTGGGCTCTTGTGTACCATACCTTACAC CAGGAGTGAAGAGAAGTGCCTGGTACGCAGTGGCCTTGTTCAGCTCATGGATCGACTGTG TAGCTTGAGCATTCAGACCGAGTCCAGCTCCAGTGAGAAACAAACCAAGAAGCAGAAGGT GGCCACCATGGCCTGGGCAGCCTTCCAGGTGCTTGCCAACCGCTGCGTCGAATGGGAAAA AGAAGAAGGTGGCTCCACAGAAGCTGTGCACTCAGGTCTGGCCCGTCAGGTGTCCAGCCT TCTCACTAACCATCTTGCCCGAGCGACTGAATGCTGTGGCAACCAGGCTGCTGGGAACGA TGCTCTCCAGGATGTCTTAAGCCTCCTCAATGATCTCTCAAGAAGTCACATAGGCAAAGC CATCTTAAGCCAGCCAGCCTGTGTGTCCAAACTCCTCTCCTTGCTGCTTGACCAACGCCC ATCCCCAAAGCTGGTTCTTATCATTCTTCAGCTGTGCCGGGCGGCCCTCCCACTCATGAG CGTAGAAGACTGTGGGAACGTGGAGCTCCCACCCTGGAGCTACTCTGTCCCCTCCCTAAA CAGCGAACAAGAGGATCCTAGTGACCCAGCATCCAAGATTGCCTCACTGCTCTTAGCCAA GCTGGCAGATTACGTGGTCCCTGGATGTCAGACAGTCCTTTCTCCAACTGCTTATGAACC GGACACCACATTGACAAAAACCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 873-1032, - strand, RNAz p=0.72509 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 873-1032, - strand, RNAz p=0.72509 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 110-276, gnl|bosTau2|chr17 (37048224-37048058) | |
| 110-276, gnl|canFam2|chr26 (12852863-12853037) | |
| 110-276, gnl|danRer3|chr1 (40566880-40566707) | |
| 110-276, gnl|dasNov1|scaffold_855 (52579-52753) | |
| 110-276, gnl|echTel1|scaffold_314814 (40233-40407) | |
| 110-276, gnl|fr1|chrUn (254699736-254699565) | |
| 110-276, gnl|galGal2|chr15 (6289921-6290095) | |
| 110-276, gnl|hg17|chr12 (111143876-111144050) | |
| 110-276, gnl|Hg17|chr12 (111144043-111143877) | |
| 110-276, gnl|loxAfr1|scaffold_10157 (62013-61839) | |
| 110-276, gnl|mm7|chr5 (120542885-120542711) | |
| 110-276, gnl|Mm7|chr5 (120542716-120542882) | |
| 110-276, gnl|monDom2|scaffold_110 (333969-334143) | |
| 110-276, gnl|oryCun1|scaffold_173365 (22917-23091) | |
| 110-276, gnl|panTro1|chr10 (113843619-113843793) | |
| 110-276, gnl|rheMac2|chr11 (113165432-113165606) | |
| 110-276, gnl|rn3|chr12 (36241828-36242002) | |
| 110-276, gnl|tetNig1|chrUn_random (34980972-34981146) | |
| 110-276, gnl|xenTro1|scaffold_1037 (163805-163979) | |
| 420-611, gnl|bosTau2|chr17 (37045090-37044899) | |
| 420-611, gnl|canFam2|chr26 (12849636-12849836) | |
| 420-611, gnl|danRer3|chr1 (40567968-40567776) | |
| 420-611, gnl|dasNov1|scaffold_855 (50905-51105) | |
| 420-611, gnl|echTel1|scaffold_314814 (37051-37262) | |
| 420-611, gnl|fr1|chrUn (254700237-254700037) | |
| 420-611, gnl|galGal2|chr15 (6288842-6289035) | |
| 420-611, gnl|hg17|chr12 (111139564-111139764) | |
| 420-611, gnl|Hg17|chr12 (111139764-111139573) | |
| 420-611, gnl|loxAfr1|scaffold_10157 (65286-65086) | |
| 420-611, gnl|mm7|chr5 (120545803-120545607) | |
| 420-611, gnl|Mm7|chr5 (120545605-120545796) | |
| 420-611, gnl|monDom2|scaffold_110 (331179-331387) | |
| 420-611, gnl|oryCun1|scaffold_173365 (18477-18677) | |
| 420-611, gnl|panTro1|chr10 (113839281-113839481) | |
| 420-611, gnl|rheMac2|chr11 (113161113-113161313) | |
| 420-611, gnl|rn3|chr12 (36237685-36237881) | |
| 420-611, gnl|tetNig1|chrUn_random (34980471-34980660) | |
| 420-611, gnl|xenTro1|scaffold_1037 (163221-163421) | |
| 754-1044, gnl|bosTau2|chr17 (37041556-37041266) | |
| 754-1044, gnl|canFam2|chr26 (12846196-12846513) | |
| 754-1044, gnl|danRer3|chr1 (40570474-40570180) | |
| 754-1044, gnl|dasNov1|scaffold_855 (47351-47673) | |
| 754-1044, gnl|echTel1|scaffold_314814 (33879-34176) | |
| 754-1044, gnl|fr1|chrUn (254700971-254700673) | |
| 754-1044, gnl|galGal2|chr15 (6287413-6287747) | |
| 754-1044, gnl|hg17|chr12 (111136006-111136328) | |
| 754-1044, gnl|Hg17|chr12 (111136317-111136027) | |
| 754-1044, gnl|loxAfr1|scaffold_5453 (81551-81232) | |
| 754-1044, gnl|mm7|chr5 (120549162-120548836) | |
| 754-1044, gnl|Mm7|chr5 (120548845-120549135) | |
| 754-1044, gnl|monDom2|scaffold_110 (327221-327536) | |
| 754-1044, gnl|panTro1|chr10 (113835719-113836041) | |
| 754-1044, gnl|rheMac2|chr11 (113157557-113157879) | |
| 754-1044, gnl|rn3|chr12 (36233545-36233867) | |
| 754-1044, gnl|tetNig1|chrUn_random (34979454-34979764) | |
| 754-1044, gnl|xenTro1|scaffold_1037 (160792-161096) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-276, gnl|bosTau2|chr17 (37048224-37048058) | |
| 110-276, gnl|canFam2|chr26 (12852863-12853037) | |
| 110-276, gnl|danRer3|chr1 (40566880-40566707) | |
| 110-276, gnl|dasNov1|scaffold_855 (52579-52753) | |
| 110-276, gnl|echTel1|scaffold_314814 (40233-40407) | |
| 110-276, gnl|fr1|chrUn (254699736-254699565) | |
| 110-276, gnl|galGal2|chr15 (6289921-6290095) | |
| 110-276, gnl|hg17|chr12 (111143876-111144050) | |
| 110-276, gnl|Hg17|chr12 (111144043-111143877) | |
| 110-276, gnl|loxAfr1|scaffold_10157 (62013-61839) | |
| 110-276, gnl|mm7|chr5 (120542885-120542711) | |
| 110-276, gnl|Mm7|chr5 (120542716-120542882) | |
| 110-276, gnl|monDom2|scaffold_110 (333969-334143) | |
| 110-276, gnl|oryCun1|scaffold_173365 (22917-23091) | |
| 110-276, gnl|panTro1|chr10 (113843619-113843793) | |
| 110-276, gnl|rheMac2|chr11 (113165432-113165606) | |
| 110-276, gnl|rn3|chr12 (36241828-36242002) | |
| 110-276, gnl|tetNig1|chrUn_random (34980972-34981146) | |
| 110-276, gnl|xenTro1|scaffold_1037 (163805-163979) | |
| 420-611, gnl|bosTau2|chr17 (37045090-37044899) | |
| 420-611, gnl|canFam2|chr26 (12849636-12849836) | |
| 420-611, gnl|danRer3|chr1 (40567968-40567776) | |
| 420-611, gnl|dasNov1|scaffold_855 (50905-51105) | |
| 420-611, gnl|echTel1|scaffold_314814 (37051-37262) | |
| 420-611, gnl|fr1|chrUn (254700237-254700037) | |
| 420-611, gnl|galGal2|chr15 (6288842-6289035) | |
| 420-611, gnl|hg17|chr12 (111139564-111139764) | |
| 420-611, gnl|Hg17|chr12 (111139764-111139573) | |
| 420-611, gnl|loxAfr1|scaffold_10157 (65286-65086) | |
| 420-611, gnl|mm7|chr5 (120545803-120545607) | |
| 420-611, gnl|Mm7|chr5 (120545605-120545796) | |
| 420-611, gnl|monDom2|scaffold_110 (331179-331387) | |
| 420-611, gnl|oryCun1|scaffold_173365 (18477-18677) | |
| 420-611, gnl|panTro1|chr10 (113839281-113839481) | |
| 420-611, gnl|rheMac2|chr11 (113161113-113161313) | |
| 420-611, gnl|rn3|chr12 (36237685-36237881) | |
| 420-611, gnl|tetNig1|chrUn_random (34980471-34980660) | |
| 420-611, gnl|xenTro1|scaffold_1037 (163221-163421) | |
| 754-1044, gnl|bosTau2|chr17 (37041556-37041266) | |
| 754-1044, gnl|canFam2|chr26 (12846196-12846513) | |
| 754-1044, gnl|danRer3|chr1 (40570474-40570180) | |
| 754-1044, gnl|dasNov1|scaffold_855 (47351-47673) | |
| 754-1044, gnl|echTel1|scaffold_314814 (33879-34176) | |
| 754-1044, gnl|fr1|chrUn (254700971-254700673) | |
| 754-1044, gnl|galGal2|chr15 (6287413-6287747) | |
| 754-1044, gnl|hg17|chr12 (111136006-111136328) | |
| 754-1044, gnl|Hg17|chr12 (111136317-111136027) | |
| 754-1044, gnl|loxAfr1|scaffold_5453 (81551-81232) | |
| 754-1044, gnl|mm7|chr5 (120549162-120548836) | |
| 754-1044, gnl|Mm7|chr5 (120548845-120549135) | |
| 754-1044, gnl|monDom2|scaffold_110 (327221-327536) | |
| 754-1044, gnl|panTro1|chr10 (113835719-113836041) | |
| 754-1044, gnl|rheMac2|chr11 (113157557-113157879) | |
| 754-1044, gnl|rn3|chr12 (36233545-36233867) | |
| 754-1044, gnl|tetNig1|chrUn_random (34979454-34979764) | |
| 754-1044, gnl|xenTro1|scaffold_1037 (160792-161096) |