Non-Coding RNA Search

Ss1.1-Pig4-TMW8060N21.5

Sequence:


               
               CCAACCCCAGCCCTGGCCTCTCTGTGTCATCACTGTCTGGGCACTCTCTGTCCCCGCACC
AGACTGGGAGCCCCAGCAAGACAGAGCTAGGGCTGTCGCTGTCACCGCTGGGTCCGTGCA
CTGCCCTGCACAGGCCGGGCACTCCGCCAGAGGTTAGGGAGTGTCAGTTGAGTGAAAGGC
TCTCCTTTTGAGACTCTTATTTCCTTGTTTCTCCCAGATCCCTCATTCTGATTTTCTTCT
CTACCCAGAAAGATCCGCAGCAGGCCCTCAGGGACCTGGTTAAGATGTGCATCCTGGCCG
ACTGCACCCTGATCCTCGCCTGGAGGTGAGCCGGAGACTGCCCCTCAGGTCAGGCTCTCT
TCAGAGAATCACTGCCCTGCCCACCCCCGCCTCTTCCCAGGAACTCGCCGTGGGAGCCTG
GTCTAGGCCCTGCCTCTCTGGGCCTCAATTTCTTTTTATTTATTTTAAAAAAAAATTGGG
GGGCAGGGGGTAGGGCACGACTTTGGCATGCACAAGTTCCTGGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACCCCAGCCCTGGCCTCTCTGTGTCATCACTGTCTGGGCACTCTCTGTCCCCGCACC
AGACTGGGAGCCCCAGCAAGACAGAGCTAGGGCTGTCGCTGTCACCGCTGGGTCCGTGCA
CTGCCCTGCACAGGCCGGGCACTCCGCCAGAGGTTAGGGAGTGTCAGTTGAGTGAAAGGC
TCTCCTTTTGAGACTCTTATTTCCTTGTTTCTCCCAGATCCCTCATTCTGATTTTCTTCT
CTACCCAGAAAGATCCGCAGCAGGCCCTCAGGGACCTGGTTAAGATGTGCATCCTGGCCG
ACTGCACCCTGATCCTCGCCTGGAGGTGAGCCGGAGACTGCCCCTCAGGTCAGGCTCTCT
TCAGAGAATCACTGCCCTGCCCACCCCCGCCTCTTCCCAGGAACTCGCCGTGGGAGCCTG
GTCTAGGCCCTGCCTCTCTGGGCCTCAATTTCTTTTTATTTATTTTAAAAAAAAATTGGG
GGGCAGGGGGTAGGGCACGACTTTGGCATGCACAAGTTCCTGGGCCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-120, + strand, RNAz p=0.999681
               

               
               225-467, - strand, RNAz p=0.939018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-120, + strand, RNAz p=0.999681
               

               
               225-467, - strand, RNAz p=0.939018

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               7-98, + strand, RNAmicro p=0.9989

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-98, + strand, RNAmicro p=0.9989

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-467, gnl|bosTau2|chr18 (38468288-38468783)
               

               
               4-467, gnl|Hg17|chr19 (50612438-50611755)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-467, gnl|bosTau2|chr18 (38468288-38468783)
               

               
               4-467, gnl|Hg17|chr19 (50612438-50611755)

	4-120, + strand, RNAz p=0.999681
	225-467, - strand, RNAz p=0.939018

	4-467, gnl\|bosTau2\|chr18 (38468288-38468783)
	4-467, gnl\|Hg17\|chr19 (50612438-50611755)