Non-Coding RNA Search

Ss1.1-Pig4-TMW8061B23.5

Sequence:


               
               CTAATTCATGGTCCAGGGATAGGTACCTCACTAGAGGTCTCCATGTGATGTCCTTGGCAT
TGAATTCCAGCAAAAGCAGAATTCCCACTGGTCCCCCTTGTGCTGGGCCAAATGCATATC
GATCATACTTACATGTAAACTGTGTATGGGGGTGGGATGACATGGCCATTCTCTCGGCAG
CGGCGAAGCTTCTGAATTATTCTCGTGTCTAGAAGGAAGCCAAGCCACTATGACTGTCTT
TCCTGGGCCTTCCTATATGCTCCTCTCCCTTAAAGCTGGCCATTAGGCCACATTTGTTTA
TGCACTTTTGCTCAACCTCTTTAGAAGAGAACCAGGATTGCCATGGGGCTTGAGTAGCTC
CTGTGTTCACAGTCTCTGTTGAGCATGGGCACTTTGGAAATCTGGGTGAGACAACAGGTC
ATGGAGCTGAGGGCCAGCCCTCACCCTCTGCCTCCTTCATTGTAGAACCCCAGTGCTAAG
GATCCATGCAGAGATCAGGGTGATAGGTGGGTGTCTTGCCTGTCTTCTCCACAGCTCAAA
GCCGTGCACGAGCAGCTTGCAGCCCTTTCACAGCCCCAGCAGAACAAACCAAAGAAAAAG
GAGAAAGACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATTCATGGTCCAGGGATAGGTACCTCACTAGAGGTCTCCATGTGATGTCCTTGGCAT
TGAATTCCAGCAAAAGCAGAATTCCCACTGGTCCCCCTTGTGCTGGGCCAAATGCATATC
GATCATACTTACATGTAAACTGTGTATGGGGGTGGGATGACATGGCCATTCTCTCGGCAG
CGGCGAAGCTTCTGAATTATTCTCGTGTCTAGAAGGAAGCCAAGCCACTATGACTGTCTT
TCCTGGGCCTTCCTATATGCTCCTCTCCCTTAAAGCTGGCCATTAGGCCACATTTGTTTA
TGCACTTTTGCTCAACCTCTTTAGAAGAGAACCAGGATTGCCATGGGGCTTGAGTAGCTC
CTGTGTTCACAGTCTCTGTTGAGCATGGGCACTTTGGAAATCTGGGTGAGACAACAGGTC
ATGGAGCTGAGGGCCAGCCCTCACCCTCTGCCTCCTTCATTGTAGAACCCCAGTGCTAAG
GATCCATGCAGAGATCAGGGTGATAGGTGGGTGTCTTGCCTGTCTTCTCCACAGCTCAAA
GCCGTGCACGAGCAGCTTGCAGCCCTTTCACAGCCCCAGCAGAACAAACCAAAGAAAAAG
GAGAAAGACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               152-268, - strand, RNAz p=0.648594

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-268, - strand, RNAz p=0.648594

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               81-324, gnl|bosTau2|chr7 (7044025-7044269)
               

               
               81-324, gnl|canFam2|chr20 (49911375-49911208)
               

               
               81-324, gnl|echTel1|scaffold_299525 (6343-6473)
               

               
               81-324, gnl|hg17|chr19 (15228370-15228594)
               

               
               81-324, gnl|Hg17|chr19 (15228682-15228381)
               

               
               81-324, gnl|loxAfr1|scaffold_7609 (1619-1761)
               

               
               81-324, gnl|mm7|chr17 (30406267-30406428)
               

               
               81-324, gnl|oryCun1|scaffold_197481 (49045-48866)
               

               
               81-324, gnl|panTro1|chr20 (15941711-15941935)
               

               
               81-324, gnl|rheMac2|chr19 (14852521-14852745)
               

               
               81-324, gnl|rn3|chr7 (12792029-12792185)
               


               
               501-612, gnl|bosTau2|chr7 (7044409-7044520)
               

               
               501-612, gnl|Hg17|chr19 (15228109-15227997)
               

               
               501-612, gnl|Mm7|chr17 (30405683-30405594)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-324, gnl|bosTau2|chr7 (7044025-7044269)
               

               
               81-324, gnl|canFam2|chr20 (49911375-49911208)
               

               
               81-324, gnl|echTel1|scaffold_299525 (6343-6473)
               

               
               81-324, gnl|hg17|chr19 (15228370-15228594)
               

               
               81-324, gnl|Hg17|chr19 (15228682-15228381)
               

               
               81-324, gnl|loxAfr1|scaffold_7609 (1619-1761)
               

               
               81-324, gnl|mm7|chr17 (30406267-30406428)
               

               
               81-324, gnl|oryCun1|scaffold_197481 (49045-48866)
               

               
               81-324, gnl|panTro1|chr20 (15941711-15941935)
               

               
               81-324, gnl|rheMac2|chr19 (14852521-14852745)
               

               
               81-324, gnl|rn3|chr7 (12792029-12792185)
               


               
               501-612, gnl|bosTau2|chr7 (7044409-7044520)
               

               
               501-612, gnl|Hg17|chr19 (15228109-15227997)
               

               
               501-612, gnl|Mm7|chr17 (30405683-30405594)

	81-324, gnl\|bosTau2\|chr7 (7044025-7044269)
	81-324, gnl\|canFam2\|chr20 (49911375-49911208)
	81-324, gnl\|echTel1\|scaffold_299525 (6343-6473)
	81-324, gnl\|hg17\|chr19 (15228370-15228594)
	81-324, gnl\|Hg17\|chr19 (15228682-15228381)
	81-324, gnl\|loxAfr1\|scaffold_7609 (1619-1761)
	81-324, gnl\|mm7\|chr17 (30406267-30406428)
	81-324, gnl\|oryCun1\|scaffold_197481 (49045-48866)
	81-324, gnl\|panTro1\|chr20 (15941711-15941935)
	81-324, gnl\|rheMac2\|chr19 (14852521-14852745)
	81-324, gnl\|rn3\|chr7 (12792029-12792185)

	501-612, gnl\|bosTau2\|chr7 (7044409-7044520)
	501-612, gnl\|Hg17\|chr19 (15228109-15227997)
	501-612, gnl\|Mm7\|chr17 (30405683-30405594)