Non-Coding RNA Search

Ss1.1-Pig4-TMW8061F08.5

Sequence:


               
               ACTTTTCAGTCCTTTTATCTTCCCAGCACCGTCTTAGCACTGCAGTTTGACCTTTGCTGT
GTTTTTAATAACTTGTAAGATCGAAGTTTAGTAGTTGTCTTGGGTTCATATTATTCCCTT
TCACTTCTTAATCAAAAAAAGGAACTAGTGCTCCCCTTAGATAAAACGTGTAGAAGATAT
TTCCCCCTTCACCCTGAAGAATTGATTTAGATAACAGCTTGATTCCCCCCCCCCCCCAGT
ATGGGAGGAAGAAGGAGGGGTGGAGACATTGAGTCTGCCTGGGAAGGTTTGAGGTGGAGG
TAGGTCTGCCTTCTCTTAGGGAGCCTCCATTTTTGGCAGTGGAACTTGAGGGAGGATCAG
CAGCTCCTGTTTTCATAAAAGCCCCCTCCAGTGGTCCTTTTCAAGAGGAAATCTGAACAT
AAGACTCAATCAAGTCACTTACAAACGGATGAAATAATTAAGGAATATAATGGCCTGGCA
AGGACAGAGTCCCTCTATCTCCTCATTTCAGATAAATGCTAATCACTTCTCTCTCTTTTA
ACAACATTTATGATGAAATGGCATGTTTTTGCCACAGCAGGGTTGCTTTCCCAACCCCGG
AGCACTCTTAATTCTGACACGCTTGATTAGAGCCTCGGGGGTCCCAAAAGATGTACTGTT
TTCCCACTTTGTGAAATTACATTCTTTTCTCACAGTTGTCGCAAACATGATATTGGTTGA
TAAGAACTTTCAAGCAGTTTTAATGACTCTTGACTGCTTCCAGTCTACTAGTTAAAAGAA
AATAGAATGTCATCTCTTTGGACTGTAAATGATTGGGCCTTTTTTTATGTTTTACGTGAA
CCTTTGTTTCTGTTTGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTCAGTCCTTTTATCTTCCCAGCACCGTCTTAGCACTGCAGTTTGACCTTTGCTGT
GTTTTTAATAACTTGTAAGATCGAAGTTTAGTAGTTGTCTTGGGTTCATATTATTCCCTT
TCACTTCTTAATCAAAAAAAGGAACTAGTGCTCCCCTTAGATAAAACGTGTAGAAGATAT
TTCCCCCTTCACCCTGAAGAATTGATTTAGATAACAGCTTGATTCCCCCCCCCCCCCAGT
ATGGGAGGAAGAAGGAGGGGTGGAGACATTGAGTCTGCCTGGGAAGGTTTGAGGTGGAGG
TAGGTCTGCCTTCTCTTAGGGAGCCTCCATTTTTGGCAGTGGAACTTGAGGGAGGATCAG
CAGCTCCTGTTTTCATAAAAGCCCCCTCCAGTGGTCCTTTTCAAGAGGAAATCTGAACAT
AAGACTCAATCAAGTCACTTACAAACGGATGAAATAATTAAGGAATATAATGGCCTGGCA
AGGACAGAGTCCCTCTATCTCCTCATTTCAGATAAATGCTAATCACTTCTCTCTCTTTTA
ACAACATTTATGATGAAATGGCATGTTTTTGCCACAGCAGGGTTGCTTTCCCAACCCCGG
AGCACTCTTAATTCTGACACGCTTGATTAGAGCCTCGGGGGTCCCAAAAGATGTACTGTT
TTCCCACTTTGTGAAATTACATTCTTTTCTCACAGTTGTCGCAAACATGATATTGGTTGA
TAAGAACTTTCAAGCAGTTTTAATGACTCTTGACTGCTTCCAGTCTACTAGTTAAAAGAA
AATAGAATGTCATCTCTTTGGACTGTAAATGATTGGGCCTTTTTTTATGTTTTACGTGAA
CCTTTGTTTCTGTTTGCCCCAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               197-337, + strand, RNAz p=0.999741
               

               
               498-615, - strand, RNAz p=0.919864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-337, + strand, RNAz p=0.999741
               

               
               498-615, - strand, RNAz p=0.919864

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               261-350, + strand, RNAmicro p=0.999838

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               261-350, + strand, RNAmicro p=0.999838

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-337, gnl|bosTau2|chr13 (62204049-62203723)
               

               
               6-337, gnl|Hg17|chr20 (51641229-51640893)
               

               
               6-337, gnl|Mm7|chr2 (169922029-169921711)
               


               
               366-833, gnl|bosTau2|chr13 (62203723-62203263)
               

               
               366-833, gnl|Hg17|chr20 (51640893-51640404)
               

               
               366-833, gnl|Mm7|chr2 (169921711-169921254)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-337, gnl|bosTau2|chr13 (62204049-62203723)
               

               
               6-337, gnl|Hg17|chr20 (51641229-51640893)
               

               
               6-337, gnl|Mm7|chr2 (169922029-169921711)
               


               
               366-833, gnl|bosTau2|chr13 (62203723-62203263)
               

               
               366-833, gnl|Hg17|chr20 (51640893-51640404)
               

               
               366-833, gnl|Mm7|chr2 (169921711-169921254)

	197-337, + strand, RNAz p=0.999741
	498-615, - strand, RNAz p=0.919864

	6-337, gnl\|bosTau2\|chr13 (62204049-62203723)
	6-337, gnl\|Hg17\|chr20 (51641229-51640893)
	6-337, gnl\|Mm7\|chr2 (169922029-169921711)

	366-833, gnl\|bosTau2\|chr13 (62203723-62203263)
	366-833, gnl\|Hg17\|chr20 (51640893-51640404)
	366-833, gnl\|Mm7\|chr2 (169921711-169921254)