Non-Coding RNA Search

Ss1.1-Pig4-TMW8061H15.5

Sequence:


               
               TTCCGCTTGACCATTACACGCAAAGATATTCAAACTCTAAACCATCTGAACTGGCTCAAT
GATGAGATCATCAATTTCTACATGAATATGCTAATGGAGCGAAGTAAAGAGAAAGGAATG
CCAAGTGTACATGCATTTAATACCTTTTTTTTCACTAAGTTAAAAACGGCTGGTTATCAA
GCAGTGAAACGTTGGACAAAGAAAGTGGATGTCTTTTCTGTTGATATTCTTTTGGTGCCC
ATTCACCTGGGAGTGCACTGGTGTCTTGCTGTTGTGGACTTTAGAAAGAAGAATATTACC
TATTACGACTCTATGGGTGGGATAAATAATGAAGCCTGCAGGATCCTCTTGCAATACCTA
AAGCAAGAAAGCATTGACAAGAAAAGGAAAGAGTTTGACACCAATGGCTGGCAGCTCTTC
AGCAAGAAAAGCCAGGAAATTCCACAGCAGATGAATGGAAGTGACTGTGGCATGTTTGCC
TGCAAATATGCTGACTGCATTACCAAAGACAGACCAATCAACTTCACACAGCAACACATG
CCGTACTTCCGGAAGCGGATGGTCTGGGAAATCCTCCACCGAAAGCTCTTGTGAAGACCG
TCTCAGTTAGCAGACATGGACTTGTGGGGGACCAGCTCTTTGTTGTCTACATCCAGAGAC
CTTGGAAACAGCTGCTCCCAACCCTCTGTTCTTGTAAAGTCCTTGATCCTGGACCAGGCC
CTGGAGAGATGCACTCACAAGCACATCTGCCTTTCCTTTTGTATCTCAGATACTATTTTT
GCAAAGAAACTTTGGTGCTGTGAAAGGGGTGAGGGACATCCCTAAGCTGAAGAGAGAGAC
TGCTTTTCACTTCTTCAGTTCTGCCATCTTGTTTTAAAAGGGCTCCAGCTTCACTCAGTC
CCTTATTAGGGGCCTGAGCGAAGCTTGGATAGACTCTTGGTTTCATAGAAACTCTTGTTG
TTAGGCCTTATTAAGAGGTAGGAAAGGACGTGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGCTTGACCATTACACGCAAAGATATTCAAACTCTAAACCATCTGAACTGGCTCAAT
GATGAGATCATCAATTTCTACATGAATATGCTAATGGAGCGAAGTAAAGAGAAAGGAATG
CCAAGTGTACATGCATTTAATACCTTTTTTTTCACTAAGTTAAAAACGGCTGGTTATCAA
GCAGTGAAACGTTGGACAAAGAAAGTGGATGTCTTTTCTGTTGATATTCTTTTGGTGCCC
ATTCACCTGGGAGTGCACTGGTGTCTTGCTGTTGTGGACTTTAGAAAGAAGAATATTACC
TATTACGACTCTATGGGTGGGATAAATAATGAAGCCTGCAGGATCCTCTTGCAATACCTA
AAGCAAGAAAGCATTGACAAGAAAAGGAAAGAGTTTGACACCAATGGCTGGCAGCTCTTC
AGCAAGAAAAGCCAGGAAATTCCACAGCAGATGAATGGAAGTGACTGTGGCATGTTTGCC
TGCAAATATGCTGACTGCATTACCAAAGACAGACCAATCAACTTCACACAGCAACACATG
CCGTACTTCCGGAAGCGGATGGTCTGGGAAATCCTCCACCGAAAGCTCTTGTGAAGACCG
TCTCAGTTAGCAGACATGGACTTGTGGGGGACCAGCTCTTTGTTGTCTACATCCAGAGAC
CTTGGAAACAGCTGCTCCCAACCCTCTGTTCTTGTAAAGTCCTTGATCCTGGACCAGGCC
CTGGAGAGATGCACTCACAAGCACATCTGCCTTTCCTTTTGTATCTCAGATACTATTTTT
GCAAAGAAACTTTGGTGCTGTGAAAGGGGTGAGGGACATCCCTAAGCTGAAGAGAGAGAC
TGCTTTTCACTTCTTCAGTTCTGCCATCTTGTTTTAAAAGGGCTCCAGCTTCACTCAGTC
CCTTATTAGGGGCCTGAGCGAAGCTTGGATAGACTCTTGGTTTCATAGAAACTCTTGTTG
TTAGGCCTTATTAAGAGGTAGGAAAGGACGTGGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877563|ref|XP_610606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877563|ref|XP_610606.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               647-765, - strand, RNAz p=0.524874
               

               
               806-994, + strand, RNAz p=0.954469

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               647-765, - strand, RNAz p=0.524874
               

               
               806-994, + strand, RNAz p=0.954469

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC045639, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC045639, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               65-272, gnl|bosTau2|chr5 (25574658-25574451)
               

               
               65-272, gnl|canFam2|chr27 (9722099-9721938)
               

               
               65-272, gnl|danRer3|chr23 (41610392-41610529)
               

               
               65-272, gnl|dasNov1|scaffold_39301 (724-587)
               

               
               65-272, gnl|echTel1|scaffold_295251 (800-962)
               

               
               65-272, gnl|fr1|chrUn (41162203-41162347)
               

               
               65-272, gnl|galGal2|chrUn (134189195-134189047)
               

               
               65-272, gnl|hg17|chr12 (46728950-46729111)
               

               
               65-272, gnl|Hg17|chr12 (46729184-46728977)
               

               
               65-272, gnl|mm7|chr15 (98051340-98051501)
               

               
               65-272, gnl|Mm7|chr15 (98051574-98051367)
               

               
               65-272, gnl|monDom2|scaffold_234 (375159-375311)
               

               
               65-272, gnl|oryCun1|scaffold_201186 (62017-61880)
               

               
               65-272, gnl|panTro1|chr10 (47797852-47798013)
               

               
               65-272, gnl|rheMac2|chr11 (45127622-45127783)
               

               
               65-272, gnl|rn3|chr7 (136829855-136830015)
               

               
               65-272, gnl|tetNig1|chr9 (4083411-4083575)
               

               
               65-272, gnl|xenTro1|scaffold_34 (395631-395795)
               


               
               528-994, gnl|bosTau2|chr5 (25570861-25570394)
               

               
               528-994, gnl|Hg17|chr12 (46725438-46724971)
               

               
               528-994, gnl|Mm7|chr15 (98046139-98045685)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-272, gnl|bosTau2|chr5 (25574658-25574451)
               

               
               65-272, gnl|canFam2|chr27 (9722099-9721938)
               

               
               65-272, gnl|danRer3|chr23 (41610392-41610529)
               

               
               65-272, gnl|dasNov1|scaffold_39301 (724-587)
               

               
               65-272, gnl|echTel1|scaffold_295251 (800-962)
               

               
               65-272, gnl|fr1|chrUn (41162203-41162347)
               

               
               65-272, gnl|galGal2|chrUn (134189195-134189047)
               

               
               65-272, gnl|hg17|chr12 (46728950-46729111)
               

               
               65-272, gnl|Hg17|chr12 (46729184-46728977)
               

               
               65-272, gnl|mm7|chr15 (98051340-98051501)
               

               
               65-272, gnl|Mm7|chr15 (98051574-98051367)
               

               
               65-272, gnl|monDom2|scaffold_234 (375159-375311)
               

               
               65-272, gnl|oryCun1|scaffold_201186 (62017-61880)
               

               
               65-272, gnl|panTro1|chr10 (47797852-47798013)
               

               
               65-272, gnl|rheMac2|chr11 (45127622-45127783)
               

               
               65-272, gnl|rn3|chr7 (136829855-136830015)
               

               
               65-272, gnl|tetNig1|chr9 (4083411-4083575)
               

               
               65-272, gnl|xenTro1|scaffold_34 (395631-395795)
               


               
               528-994, gnl|bosTau2|chr5 (25570861-25570394)
               

               
               528-994, gnl|Hg17|chr12 (46725438-46724971)
               

               
               528-994, gnl|Mm7|chr15 (98046139-98045685)

	647-765, - strand, RNAz p=0.524874
	806-994, + strand, RNAz p=0.954469

	65-272, gnl\|bosTau2\|chr5 (25574658-25574451)
	65-272, gnl\|canFam2\|chr27 (9722099-9721938)
	65-272, gnl\|danRer3\|chr23 (41610392-41610529)
	65-272, gnl\|dasNov1\|scaffold_39301 (724-587)
	65-272, gnl\|echTel1\|scaffold_295251 (800-962)
	65-272, gnl\|fr1\|chrUn (41162203-41162347)
	65-272, gnl\|galGal2\|chrUn (134189195-134189047)
	65-272, gnl\|hg17\|chr12 (46728950-46729111)
	65-272, gnl\|Hg17\|chr12 (46729184-46728977)
	65-272, gnl\|mm7\|chr15 (98051340-98051501)
	65-272, gnl\|Mm7\|chr15 (98051574-98051367)
	65-272, gnl\|monDom2\|scaffold_234 (375159-375311)
	65-272, gnl\|oryCun1\|scaffold_201186 (62017-61880)
	65-272, gnl\|panTro1\|chr10 (47797852-47798013)
	65-272, gnl\|rheMac2\|chr11 (45127622-45127783)
	65-272, gnl\|rn3\|chr7 (136829855-136830015)
	65-272, gnl\|tetNig1\|chr9 (4083411-4083575)
	65-272, gnl\|xenTro1\|scaffold_34 (395631-395795)

	528-994, gnl\|bosTau2\|chr5 (25570861-25570394)
	528-994, gnl\|Hg17\|chr12 (46725438-46724971)
	528-994, gnl\|Mm7\|chr15 (98046139-98045685)