Non-Coding RNA Search

Ss1.1-Pig4-TMW8061I02.3

Sequence:


               
               CAGCCAGCTCTCTACCCCCAAGTCTAAGCAGTCTCCCATCTCTACGCCCACCAGTCCTGG
CAGCCTCCGGAAGCACAAGGACCTGTACCTGCCTCTGTCCTTGGATGACTCAGACTCACT
TGGAGATTCCATGTGAAGGAGGATAGTGTTCAGAGTCCAGAGTACAAATCCAAGCTTACC
ATTACAATAGGGTACTTCTGCTCAAGTGTCCAACAGGGCTATTGGTGCTTTCAAGTTTTT
ATTTTGTTGTTGTTGTTGTTGTTATTTTTTAAAACACACTGTAATAGGTTGGGTTTATTT
TCCTGTGATATCTCCTCTGGGCCACTGATCCACAGTTACCAATTAGAAGAGATAGATTGA
TAACCATCCTTTGGGGTAACTTTTCCAGGGATGCAAACTATGCTAGTCCATGACCTTTCT
ATTGAATGCTTAGGCACCTGCTTTATTTTTCCCACCTCGCTTTGCTCTCGACAGTCTTCC
TTCTGTAGAGGGTTGTTTCTATACATAGCACTTAAGATACGTGTGTGGAAAAAAAAACTC
ATTGGCAAATCCAAAAGTGACAAACACAAGTGTCCCTTGCCTCCCCATCTCAAGAATGCT
GGAGGATGCTGAGAGGATGGCAAGGCATCTCCCCAGCCTGGCTCTTCACTCCTGATTGAG
CCCCCAGTTTGTTGTCTAGCACCAATTCTGGCTGTCAAGGGGGAGAAACACCAGCAACTT
GTCATTCTGACACCAGATGCTTAGGACCTCGGTGCAGGGCTAACTGAAAGAGCCTGGGCA
AAATTGGAAAACACTGTAGACATTTCAGTAGTGTTTATAAAGCACAGTGAATTCCTTGTC
AGCATCTCCACTGGGGCAATTTAGAATCAATAAGCAATTAATAAGAGCTGGAGGTGAGGG
ACTTTTCATATGCCTAATTCCTCTAGGAGGCTGTCTCACATAGCGAGTTACGACACAAAC
TGTACGGTATCCATCTATCTCTGTTCTATTGAATGCCTTGTAAACAGCCAACACTGAAAA
CACTGTGAGAATTTGTTTTCAGGTCTGACACCTTTCGGTCGCTTTTTATAGCAAGAAACC
AATATCCTTTTTATAAAACCTCGTGTCTGTATTTCAGGAGCATACTCTTCAGGCTCCTTT
TTTATAAACTGGTGACTTTTCTTTTGTCTAAAAAACACATGCAGAAAATTTACCAAAAAA
AATGCAGAAGAATAACGTAGTTTAGAAATCATGCTGTCACTGCCAAACAGAAACCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCAGCTCTCTACCCCCAAGTCTAAGCAGTCTCCCATCTCTACGCCCACCAGTCCTGG
CAGCCTCCGGAAGCACAAGGACCTGTACCTGCCTCTGTCCTTGGATGACTCAGACTCACT
TGGAGATTCCATGTGAAGGAGGATAGTGTTCAGAGTCCAGAGTACAAATCCAAGCTTACC
ATTACAATAGGGTACTTCTGCTCAAGTGTCCAACAGGGCTATTGGTGCTTTCAAGTTTTT
ATTTTGTTGTTGTTGTTGTTGTTATTTTTTAAAACACACTGTAATAGGTTGGGTTTATTT
TCCTGTGATATCTCCTCTGGGCCACTGATCCACAGTTACCAATTAGAAGAGATAGATTGA
TAACCATCCTTTGGGGTAACTTTTCCAGGGATGCAAACTATGCTAGTCCATGACCTTTCT
ATTGAATGCTTAGGCACCTGCTTTATTTTTCCCACCTCGCTTTGCTCTCGACAGTCTTCC
TTCTGTAGAGGGTTGTTTCTATACATAGCACTTAAGATACGTGTGTGGAAAAAAAAACTC
ATTGGCAAATCCAAAAGTGACAAACACAAGTGTCCCTTGCCTCCCCATCTCAAGAATGCT
GGAGGATGCTGAGAGGATGGCAAGGCATCTCCCCAGCCTGGCTCTTCACTCCTGATTGAG
CCCCCAGTTTGTTGTCTAGCACCAATTCTGGCTGTCAAGGGGGAGAAACACCAGCAACTT
GTCATTCTGACACCAGATGCTTAGGACCTCGGTGCAGGGCTAACTGAAAGAGCCTGGGCA
AAATTGGAAAACACTGTAGACATTTCAGTAGTGTTTATAAAGCACAGTGAATTCCTTGTC
AGCATCTCCACTGGGGCAATTTAGAATCAATAAGCAATTAATAAGAGCTGGAGGTGAGGG
ACTTTTCATATGCCTAATTCCTCTAGGAGGCTGTCTCACATAGCGAGTTACGACACAAAC
TGTACGGTATCCATCTATCTCTGTTCTATTGAATGCCTTGTAAACAGCCAACACTGAAAA
CACTGTGAGAATTTGTTTTCAGGTCTGACACCTTTCGGTCGCTTTTTATAGCAAGAAACC
AATATCCTTTTTATAAAACCTCGTGTCTGTATTTCAGGAGCATACTCTTCAGGCTCCTTT
TTTATAAACTGGTGACTTTTCTTTTGTCTAAAAAACACATGCAGAAAATTTACCAAAAAA
AATGCAGAAGAATAACGTAGTTTAGAAATCATGCTGTCACTGCCAAACAGAAACCTCCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               434-542, - strand, RNAz p=0.888666
               

               
               1056-1204, - strand, RNAz p=0.962293

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-542, - strand, RNAz p=0.888666
               

               
               1056-1204, - strand, RNAz p=0.962293

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               78-1259, gnl|bosTau2|chrX (19464014-19462834)
               

               
               78-1259, gnl|Hg17|chrX (110351118-110349934)
               

               
               78-1259, gnl|Mm7|chrX (138527929-138526781)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-1259, gnl|bosTau2|chrX (19464014-19462834)
               

               
               78-1259, gnl|Hg17|chrX (110351118-110349934)
               

               
               78-1259, gnl|Mm7|chrX (138527929-138526781)

	434-542, - strand, RNAz p=0.888666
	1056-1204, - strand, RNAz p=0.962293

	78-1259, gnl\|bosTau2\|chrX (19464014-19462834)
	78-1259, gnl\|Hg17\|chrX (110351118-110349934)
	78-1259, gnl\|Mm7\|chrX (138527929-138526781)