Ss1.1-Pig4-TMW8061I18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTGCTTTTCTGTCATGTCTATTGGCGTGAAATATTTTTCCCCACCCTTTCACTTTCA ATCTATATGTATCTTTTGTCCTAAGGTGAGTTTCTTGTAGGCAGCATATTGAAGGTTTTT GCCTTTTTATCCACTCAGCCACTCTGTGTAGAAGAGCAGTATTCTAGCATAGAAGTCTTG GTGGAATGCTTGGTGTTGGAATCCTGAGCTAAGATATTAGGCTTCAATTTGCCAGGCAAA GAGAACTCATGCTGTACTATCAGACAGTGTCCAGTGAGCTGGATTGGAGGATACAGTCAG GAGACCAAAGCAGGAAGATACTGCAGAAGTCCACATACCTTGTGATTAGGGCCTGGGCTC CATTGGTTACAGTGAGAATGGAAATGGTATAAAAGGAGCACTGTTTCTTAAGAGCCTTAT TGACTGATGATGAATGAATGGTAAGAAGAGAGAAGTGATGGGAAACAGGCCTGGATTGAC AAGAGGAACCTAGGAATAGAGAAATCTAGAAGGCAAACTGATTTAGATGAGGAAGCTGTG TACCTGGTATCGGGATATCACAGCAGAGGTGACACACGGAAGAAGAGGAGCAGAGGAGTG GAGTGTAGAGATAGAGTTTTTCTGTTTAAGCATATTTGTGGGCTTAGTTTTCTATATTAA AAAAAAAACAGATTATTGCACATTAGGTATTGTTTGCAAAATAATAGAAAACTGAGGGAA ATAACATGGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTGCTTTTCTGTCATGTCTATTGGCGTGAAATATTTTTCCCCACCCTTTCACTTTCA ATCTATATGTATCTTTTGTCCTAAGGTGAGTTTCTTGTAGGCAGCATATTGAAGGTTTTT GCCTTTTTATCCACTCAGCCACTCTGTGTAGAAGAGCAGTATTCTAGCATAGAAGTCTTG GTGGAATGCTTGGTGTTGGAATCCTGAGCTAAGATATTAGGCTTCAATTTGCCAGGCAAA GAGAACTCATGCTGTACTATCAGACAGTGTCCAGTGAGCTGGATTGGAGGATACAGTCAG GAGACCAAAGCAGGAAGATACTGCAGAAGTCCACATACCTTGTGATTAGGGCCTGGGCTC CATTGGTTACAGTGAGAATGGAAATGGTATAAAAGGAGCACTGTTTCTTAAGAGCCTTAT TGACTGATGATGAATGAATGGTAAGAAGAGAGAAGTGATGGGAAACAGGCCTGGATTGAC AAGAGGAACCTAGGAATAGAGAAATCTAGAAGGCAAACTGATTTAGATGAGGAAGCTGTG TACCTGGTATCGGGATATCACAGCAGAGGTGACACACGGAAGAAGAGGAGCAGAGGAGTG GAGTGTAGAGATAGAGTTTTTCTGTTTAAGCATATTTGTGGGCTTAGTTTTCTATATTAA AAAAAAAACAGATTATTGCACATTAGGTATTGTTTGCAAAATAATAGAAAACTGAGGGAA ATAACATGGTGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 171-404, - strand, RNAz p=0.985179 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 171-404, - strand, RNAz p=0.985179 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 171-672, gnl|bosTau2|chr8 (21727344-21726810) | |
| 171-672, gnl|canFam2|chr1 (92138276-92138591) | |
| 171-672, gnl|canFam2|chr1 (92138275-92138593) | |
| 171-672, gnl|canFam2|chr1 (92138594-92138276) | |
| 171-672, gnl|canFam2|chr1 (92138276-92138593) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4088-3730) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4089-3728) | |
| 171-672, gnl|dasNov1|scaffold_223461 (3727-4088) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4088-3728) | |
| 171-672, gnl|hg17|chr22_random (93515-93869) | |
| 171-672, gnl|hg17|chr9 (121426-121783) | |
| 171-672, gnl|hg17|chr9 (68133724-68134081) | |
| 171-672, gnl|hg17|chr9 (67950864-67951220) | |
| 171-672, gnl|Hg17|chr9 (121931-121433) | |
| 171-672, gnl|mm7|chr19 (24626537-24626832) | |
| 171-672, gnl|mm7|chr19 (24626536-24626834) | |
| 171-672, gnl|mm7|chr19 (24626834-24626537) | |
| 171-672, gnl|mm7|chr19 (24626537-24626834) | |
| 171-672, gnl|panTro1|chr11 (51696556-51696198) | |
| 171-672, gnl|panTro1|chr11 (51696198-51696555) | |
| 171-672, gnl|panTro1|chrUn_random (6691902-6692256) | |
| 171-672, gnl|panTro1|chrUn_random (6691901-6692258) | |
| 171-672, gnl|rheMac2|chr15 (77067357-77067003) | |
| 171-672, gnl|rheMac2|chr15 (77067358-77067001) | |
| 171-672, gnl|rheMac2|chr15 (77067000-77067357) | |
| 171-672, gnl|rheMac2|chr15 (77067357-77067001) | |
| 171-672, gnl|rn3|chr1 (228530156-228530442) | |
| 171-672, gnl|rn3|chr1 (228530155-228530444) | |
| 171-672, gnl|rn3|chr1 (228530445-228530156) | |
| 171-672, gnl|rn3|chr1 (228530156-228530444) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-672, gnl|bosTau2|chr8 (21727344-21726810) | |
| 171-672, gnl|canFam2|chr1 (92138276-92138591) | |
| 171-672, gnl|canFam2|chr1 (92138275-92138593) | |
| 171-672, gnl|canFam2|chr1 (92138594-92138276) | |
| 171-672, gnl|canFam2|chr1 (92138276-92138593) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4088-3730) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4089-3728) | |
| 171-672, gnl|dasNov1|scaffold_223461 (3727-4088) | |
| 171-672, gnl|dasNov1|scaffold_223461 (4088-3728) | |
| 171-672, gnl|hg17|chr22_random (93515-93869) | |
| 171-672, gnl|hg17|chr9 (121426-121783) | |
| 171-672, gnl|hg17|chr9 (68133724-68134081) | |
| 171-672, gnl|hg17|chr9 (67950864-67951220) | |
| 171-672, gnl|Hg17|chr9 (121931-121433) | |
| 171-672, gnl|mm7|chr19 (24626537-24626832) | |
| 171-672, gnl|mm7|chr19 (24626536-24626834) | |
| 171-672, gnl|mm7|chr19 (24626834-24626537) | |
| 171-672, gnl|mm7|chr19 (24626537-24626834) | |
| 171-672, gnl|panTro1|chr11 (51696556-51696198) | |
| 171-672, gnl|panTro1|chr11 (51696198-51696555) | |
| 171-672, gnl|panTro1|chrUn_random (6691902-6692256) | |
| 171-672, gnl|panTro1|chrUn_random (6691901-6692258) | |
| 171-672, gnl|rheMac2|chr15 (77067357-77067003) | |
| 171-672, gnl|rheMac2|chr15 (77067358-77067001) | |
| 171-672, gnl|rheMac2|chr15 (77067000-77067357) | |
| 171-672, gnl|rheMac2|chr15 (77067357-77067001) | |
| 171-672, gnl|rn3|chr1 (228530156-228530442) | |
| 171-672, gnl|rn3|chr1 (228530155-228530444) | |
| 171-672, gnl|rn3|chr1 (228530445-228530156) | |
| 171-672, gnl|rn3|chr1 (228530156-228530444) |