Ss1.1-Pig4-TMW8062F20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTAGGCAGGCCTCAGGGCACGGCCCAGACGCGTGTGAGCCCTGCTA GAGCGAGGGAACCAGAGGGAACCAGGGCCCTAAAGGGTGTCAGAGACTAATGTGGTAGGG GGCTTCAGAGCCTCCCAGTCCAGAGCCGGATTGGCGAGTTAGACGCTTGTAGATCCGAGG TCGGATTGGGGAGGGGGTCTCTGGGAAGTTGGCTAGCAACGCAAGGATTGGGGGGATTTA AGTGCTTAGAGATCGAAGCAGGTCGTGGGGAGGGGGACTCAGACAATTGGAAAGCCTGGG CGGTTATTTGGGGAGGGGTCTTTGCGCTCAGAGGAAGCTCGAAGCAGCACCTGCTTGGCT AAAGGCCTGAGGCTTTGTCAAGAGAAGCTTCTGTGGAGGGGGGCCCGACTAGGCCAAGCT GCAAGAAAGAAAGTGAATAAACCTGGACTTGAAGTGGGTGGGGGCCCCTGAGAGGGGAAT CACAAAGGGTGAGCCATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAAT AATTCCATCCAAACCCGGCAGCTGTTAGCCGAGCAACTGGCCGATGACCGCATGGCTCTG GTGTCGGGCATCAGCCTGGACCCAGAAGCAGCGATTGGCGTGACGAAGCAGTCACCCCCT AAGTGGGTGGATGGCGTGGACGAGATACAGTGCGACGTTGGCCGAATTAAACAGAAGATG AAGGACTTAGCCATCCTCCACGACCAGCATTTAAACAGGCCCACCCTGGACGACAGCAGC GAGCAGGAGCATGCCATCGAGATCGCCACTCAGGAGGTCACTCAGCTCTTCCACAGGTGC CAGCGCGCGGTGCAGGCTCTGCCCAGCCGGGCCCGCAGGGCCTGCTCGGAGCAGGAGGAG CGGCTGCTGCGCAATGTGGTGGCCTCCCTGGCACAAGGCGCTGCAGGAGCTGTCCACCGG GCTTCCGGGCTCGCGCAGTCCGGCTACCCTGAAGCGCATGAAGAATCGAGAGGAAAGGTC CCAGCATTTTTTTGATACATCACTGCCACTGATGGACGATGGCGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTAGGCAGGCCTCAGGGCACGGCCCAGACGCGTGTGAGCCCTGCTA GAGCGAGGGAACCAGAGGGAACCAGGGCCCTAAAGGGTGTCAGAGACTAATGTGGTAGGG GGCTTCAGAGCCTCCCAGTCCAGAGCCGGATTGGCGAGTTAGACGCTTGTAGATCCGAGG TCGGATTGGGGAGGGGGTCTCTGGGAAGTTGGCTAGCAACGCAAGGATTGGGGGGATTTA AGTGCTTAGAGATCGAAGCAGGTCGTGGGGAGGGGGACTCAGACAATTGGAAAGCCTGGG CGGTTATTTGGGGAGGGGTCTTTGCGCTCAGAGGAAGCTCGAAGCAGCACCTGCTTGGCT AAAGGCCTGAGGCTTTGTCAAGAGAAGCTTCTGTGGAGGGGGGCCCGACTAGGCCAAGCT GCAAGAAAGAAAGTGAATAAACCTGGACTTGAAGTGGGTGGGGGCCCCTGAGAGGGGAAT CACAAAGGGTGAGCCATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAAT AATTCCATCCAAACCCGGCAGCTGTTAGCCGAGCAACTGGCCGATGACCGCATGGCTCTG GTGTCGGGCATCAGCCTGGACCCAGAAGCAGCGATTGGCGTGACGAAGCAGTCACCCCCT AAGTGGGTGGATGGCGTGGACGAGATACAGTGCGACGTTGGCCGAATTAAACAGAAGATG AAGGACTTAGCCATCCTCCACGACCAGCATTTAAACAGGCCCACCCTGGACGACAGCAGC GAGCAGGAGCATGCCATCGAGATCGCCACTCAGGAGGTCACTCAGCTCTTCCACAGGTGC CAGCGCGCGGTGCAGGCTCTGCCCAGCCGGGCCCGCAGGGCCTGCTCGGAGCAGGAGGAG CGGCTGCTGCGCAATGTGGTGGCCTCCCTGGCACAAGGCGCTGCAGGAGCTGTCCACCGG GCTTCCGGGCTCGCGCAGTCCGGCTACCCTGAAGCGCATGAAGAATCGAGAGGAAAGGTC CCAGCATTTTTTTGATACATCACTGCCACTGATGGACGATGGCGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 80-226, + strand, RNAz p=0.927593 | |
| 97-256, + strand, RNAz p=0.990075 | |
| 823-933, + strand, RNAz p=0.605388 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-226, + strand, RNAz p=0.927593 | |
| 97-256, + strand, RNAz p=0.990075 | |
| 823-933, + strand, RNAz p=0.605388 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 17-290, gnl|bosTau2|chr13 (38139934-38139672) | |
| 17-290, gnl|canFam2|chr24 (46406447-46406617) | |
| 17-290, gnl|dasNov1|scaffold_44953 (50491-50289) | |
| 17-290, gnl|echTel1|scaffold_322099 (39449-39244) | |
| 17-290, gnl|hg17|chr20 (56660003-56660200) | |
| 17-290, gnl|loxAfr1|scaffold_5716 (40187-39983) | |
| 17-290, gnl|mm7|chr2 (173820977-173821178) | |
| 17-290, gnl|oryCun1|scaffold_179371 (13985-13766) | |
| 17-290, gnl|panTro1|chr21 (59657676-59657874) | |
| 17-290, gnl|rheMac2|chr10 (5876385-5876190) | |
| 17-290, gnl|rn3|chr3 (164900774-164900963) | |
| 407-579, gnl|bosTau2|chr13 (38139528-38139354) | |
| 407-579, gnl|Hg17|chr20 (56660379-56660552) | |
| 407-579, gnl|Mm7|chr2 (173821353-173821535) | |
| 823-988, gnl|bosTau2|chr13 (38123099-38122937) | |
| 823-988, gnl|canFam2|chr24 (46423386-46423582) | |
| 823-988, gnl|danRer3|chr6 (31456384-31456197) | |
| 823-988, gnl|dasNov1|scaffold_47332 (1733-1906) | |
| 823-988, gnl|echTel1|scaffold_246405 (13538-13354) | |
| 823-988, gnl|fr1|chrUn (176399359-176399161) | |
| 823-988, gnl|galGal2|chr20 (10596868-10596690) | |
| 823-988, gnl|hg17|chr20 (56677743-56677940) | |
| 823-988, gnl|Hg17|chr20 (56677750-56677909) | |
| 823-988, gnl|loxAfr1|scaffold_5716 (20497-20313) | |
| 823-988, gnl|mm7|chr2 (173836786-173836981) | |
| 823-988, gnl|Mm7|chr2 (173836793-173836955) | |
| 823-988, gnl|monDom2|scaffold_1 (173156734-173156913) | |
| 823-988, gnl|panTro1|chr21 (59675407-59675604) | |
| 823-988, gnl|rheMac2|chr10 (5858302-5858105) | |
| 823-988, gnl|rn3|chr3 (164922399-164922594) | |
| 823-988, gnl|tetNig1|chr11 (2102326-2102499) | |
| 823-988, gnl|xenTro1|scaffold_1886 (7568-7382) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-290, gnl|bosTau2|chr13 (38139934-38139672) | |
| 17-290, gnl|canFam2|chr24 (46406447-46406617) | |
| 17-290, gnl|dasNov1|scaffold_44953 (50491-50289) | |
| 17-290, gnl|echTel1|scaffold_322099 (39449-39244) | |
| 17-290, gnl|hg17|chr20 (56660003-56660200) | |
| 17-290, gnl|loxAfr1|scaffold_5716 (40187-39983) | |
| 17-290, gnl|mm7|chr2 (173820977-173821178) | |
| 17-290, gnl|oryCun1|scaffold_179371 (13985-13766) | |
| 17-290, gnl|panTro1|chr21 (59657676-59657874) | |
| 17-290, gnl|rheMac2|chr10 (5876385-5876190) | |
| 17-290, gnl|rn3|chr3 (164900774-164900963) | |
| 407-579, gnl|bosTau2|chr13 (38139528-38139354) | |
| 407-579, gnl|Hg17|chr20 (56660379-56660552) | |
| 407-579, gnl|Mm7|chr2 (173821353-173821535) | |
| 823-988, gnl|bosTau2|chr13 (38123099-38122937) | |
| 823-988, gnl|canFam2|chr24 (46423386-46423582) | |
| 823-988, gnl|danRer3|chr6 (31456384-31456197) | |
| 823-988, gnl|dasNov1|scaffold_47332 (1733-1906) | |
| 823-988, gnl|echTel1|scaffold_246405 (13538-13354) | |
| 823-988, gnl|fr1|chrUn (176399359-176399161) | |
| 823-988, gnl|galGal2|chr20 (10596868-10596690) | |
| 823-988, gnl|hg17|chr20 (56677743-56677940) | |
| 823-988, gnl|Hg17|chr20 (56677750-56677909) | |
| 823-988, gnl|loxAfr1|scaffold_5716 (20497-20313) | |
| 823-988, gnl|mm7|chr2 (173836786-173836981) | |
| 823-988, gnl|Mm7|chr2 (173836793-173836955) | |
| 823-988, gnl|monDom2|scaffold_1 (173156734-173156913) | |
| 823-988, gnl|panTro1|chr21 (59675407-59675604) | |
| 823-988, gnl|rheMac2|chr10 (5858302-5858105) | |
| 823-988, gnl|rn3|chr3 (164922399-164922594) | |
| 823-988, gnl|tetNig1|chr11 (2102326-2102499) | |
| 823-988, gnl|xenTro1|scaffold_1886 (7568-7382) |