Non-Coding RNA Search

Ss1.1-Pig4-TMW8062G03.5

Sequence:


               
               CTATTCCTTGTTCACCCCCACCGAGGACTCTTTCTGCCCCCGCTTCACTTCCAGGACCCA
GATCTACTCTGGAACTGAAGGAGGGCGTCCAGGTGCTGGTCCTAGGCTTTGTCCTTGAAT
TTCTCCAGATAGTTTCTGAGGTCTTTGGGGGTGCTTACGCCCACGTCCTGACACACCCAT
TTGATGTCCTCTTCGGTCCCGCTGAGGATGGAGTTCACGGTCGGGCAGCCGTCGTCGGCG
GGGATGGTGGTGAAGGTGGTGAACTTCACCTTCTTCCTCTTGGAGGTGGGCGAGTGCAGG
GGCTCGTGTTTCTGGTCCCTGGCCTGCCGGCCCCCCGATTCGGCAGGCCTGGGGATCTGG
CTCTGCACGTGCTTTTGGGAACCTCCGTTGAGCAGGAGGCGGTTGCTCTCCTCGAAGCCC
CCCGGCCCTCGGTCAATGATGGTTGTGTGCTCGTCCTGCGGGGGGGACCCCTCGCCCACG
TTCTCCAGGAGCTCCGCCTCGTTGCCCAGCCACACCCAGTCGTGCGAGTGAGTCATGGAG
GCCTGGCCCTCCGGGGGCACCTGCTTGTGCCTGTACTTGAGGGCGAAGGTGGCGCAGTTG
ATCAGGAAGACGAGGATGGCCAGGCAGAAGACGCCCAGGAGGGCGTACATGCCGATCTCC
AGGTCGCTCAGGCCGCGGGGCGCCTGCACCAGGTCGCCGTCCGCCAGCCCGCCGCCCGCC
TGGGGCAGGTCCACCTGCGCCGGGAAGTTGGCGAAGTCGATGGGGATGTTCTGCAGCTGG
CCCTCGCCCGCCAGCCGGGCCCCGTCCAGCCGGCTGTTCTTGACCACCTTGTTGTCCAGC
AGCGACCTGGCCGTGGTGCTGCCTCTCCGGAGGGCGCCTTCCTCGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTCCTTGTTCACCCCCACCGAGGACTCTTTCTGCCCCCGCTTCACTTCCAGGACCCA
GATCTACTCTGGAACTGAAGGAGGGCGTCCAGGTGCTGGTCCTAGGCTTTGTCCTTGAAT
TTCTCCAGATAGTTTCTGAGGTCTTTGGGGGTGCTTACGCCCACGTCCTGACACACCCAT
TTGATGTCCTCTTCGGTCCCGCTGAGGATGGAGTTCACGGTCGGGCAGCCGTCGTCGGCG
GGGATGGTGGTGAAGGTGGTGAACTTCACCTTCTTCCTCTTGGAGGTGGGCGAGTGCAGG
GGCTCGTGTTTCTGGTCCCTGGCCTGCCGGCCCCCCGATTCGGCAGGCCTGGGGATCTGG
CTCTGCACGTGCTTTTGGGAACCTCCGTTGAGCAGGAGGCGGTTGCTCTCCTCGAAGCCC
CCCGGCCCTCGGTCAATGATGGTTGTGTGCTCGTCCTGCGGGGGGGACCCCTCGCCCACG
TTCTCCAGGAGCTCCGCCTCGTTGCCCAGCCACACCCAGTCGTGCGAGTGAGTCATGGAG
GCCTGGCCCTCCGGGGGCACCTGCTTGTGCCTGTACTTGAGGGCGAAGGTGGCGCAGTTG
ATCAGGAAGACGAGGATGGCCAGGCAGAAGACGCCCAGGAGGGCGTACATGCCGATCTCC
AGGTCGCTCAGGCCGCGGGGCGCCTGCACCAGGTCGCCGTCCGCCAGCCCGCCGCCCGCC
TGGGGCAGGTCCACCTGCGCCGGGAAGTTGGCGAAGTCGATGGGGATGTTCTGCAGCTGG
CCCTCGCCCGCCAGCCGGGCCCCGTCCAGCCGGCTGTTCTTGACCACCTTGTTGTCCAGC
AGCGACCTGGCCGTGGTGCTGCCTCTCCGGAGGGCGCCTTCCTCGCGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50949335|emb|CAH10715.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50949335|emb|CAH10715.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               311-430, - strand, RNAz p=0.549418

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-430, - strand, RNAz p=0.549418

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               111-679, gnl|bosTau2|chr17 (25670428-25669872)
               

               
               111-679, gnl|Hg17|chr12 (124664127-124663620)
               

               
               111-679, gnl|Mm7|chr5 (125027553-125026997)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-679, gnl|bosTau2|chr17 (25670428-25669872)
               

               
               111-679, gnl|Hg17|chr12 (124664127-124663620)
               

               
               111-679, gnl|Mm7|chr5 (125027553-125026997)

	111-679, gnl\|bosTau2\|chr17 (25670428-25669872)
	111-679, gnl\|Hg17\|chr12 (124664127-124663620)
	111-679, gnl\|Mm7\|chr5 (125027553-125026997)