Non-Coding RNA Search

Ss1.1-Pig4-TMW8062L22.5

Sequence:


               
               ATAGCAGAGGGTTCTCATGTTCCCTTCTGTCTCTTTGCTGAAAATGTAGCACTGGCAACT
GGAACATTGGATTCCCCTGGCCGCCTGGAAATTGAAGGGGAAGACTTTCCTTTTGTGTTT
CACTCAATGCCTGAATTTGGAGCTGCTATAAGCAAAGGAAAGTTGCGTGGCAAAGTGGAT
CCAGTGTTAATTGTGGGTTCTGGGCTTACTGCAGCTGATGCAGTACTGTGTGCTTACAAC
AATAATGTCCCTGTGATTCATGTATTTCGCAGACGAGTAACTGATCCAAGCTTAATTTTC
AAACAGCTTCCAAAAAAGCTTTATCCAGAATACCATAAAGTCTATCATATGATGTGTACT
CAGTCATATTCTTTAGACTCAAATCTTTTATCTGATTATACCAGTTTTCCTGAGCACCAT
GTGCTTTCCTTTAAGTCGGACATGAAATGCATTCTTCAGAACATCTCTGGATTGAAGAAA
ATATTTAAGCTTTCTGCAGCAGTGGTGTTGATAGGTTCTCATCCCAATCTGTCTTTTCTG
AAGGAGCAAGGGTGTTACCTGGGCCATAACTCAAGCCAGCCAATCACATGTAAGGGTAAT
CCTGTGGAAATAGATGCATATACTTACGAGTGTGTTAAAGAAGCCAATCTTTTTGCATTG
GGTCCTTTGGTTGGAGACAATTTTGTTCGATTTTTAAAGGGAGGGGCATTGGGTGTTACA
CGTTGTTTAGCTACAAGACAGAAGAAAAAGCAGCATTTATTTGTTGAAAGAGGAGGGGGA
GATGGGATAGCTTAAAGTCGGTTTATAAGTCATTTATATGGATACTTTATTATTAAAGAT
TTTTAATAGTGGTTTTAACTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCAGAGGGTTCTCATGTTCCCTTCTGTCTCTTTGCTGAAAATGTAGCACTGGCAACT
GGAACATTGGATTCCCCTGGCCGCCTGGAAATTGAAGGGGAAGACTTTCCTTTTGTGTTT
CACTCAATGCCTGAATTTGGAGCTGCTATAAGCAAAGGAAAGTTGCGTGGCAAAGTGGAT
CCAGTGTTAATTGTGGGTTCTGGGCTTACTGCAGCTGATGCAGTACTGTGTGCTTACAAC
AATAATGTCCCTGTGATTCATGTATTTCGCAGACGAGTAACTGATCCAAGCTTAATTTTC
AAACAGCTTCCAAAAAAGCTTTATCCAGAATACCATAAAGTCTATCATATGATGTGTACT
CAGTCATATTCTTTAGACTCAAATCTTTTATCTGATTATACCAGTTTTCCTGAGCACCAT
GTGCTTTCCTTTAAGTCGGACATGAAATGCATTCTTCAGAACATCTCTGGATTGAAGAAA
ATATTTAAGCTTTCTGCAGCAGTGGTGTTGATAGGTTCTCATCCCAATCTGTCTTTTCTG
AAGGAGCAAGGGTGTTACCTGGGCCATAACTCAAGCCAGCCAATCACATGTAAGGGTAAT
CCTGTGGAAATAGATGCATATACTTACGAGTGTGTTAAAGAAGCCAATCTTTTTGCATTG
GGTCCTTTGGTTGGAGACAATTTTGTTCGATTTTTAAAGGGAGGGGCATTGGGTGTTACA
CGTTGTTTAGCTACAAGACAGAAGAAAAAGCAGCATTTATTTGTTGAAAGAGGAGGGGGA
GATGGGATAGCTTAAAGTCGGTTTATAAGTCATTTATATGGATACTTTATTATTAAAGAT
TTTTAATAGTGGTTTTAACTGTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16307527|gb|AAH10311.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16307527|gb|AAH10311.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-120, - strand, RNAz p=0.604629
               

               
               281-560, - strand, RNAz p=0.755313

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.604629
               

               
               281-560, - strand, RNAz p=0.755313

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-857, gnl|bosTau2|chr14 (46013055-46012200)
               

               
               2-857, gnl|canFam2|chr29 (38393333-38394168)
               

               
               2-857, gnl|danRer3|chr16 (27764204-27763264)
               

               
               2-857, gnl|dasNov1|scaffold_224808 (3175-4013)
               

               
               2-857, gnl|echTel1|scaffold_36376 (2408-1576)
               

               
               2-857, gnl|fr1|chrUn (62428061-62429028)
               

               
               2-857, gnl|galGal2|chr2 (123700759-123701597)
               

               
               2-857, gnl|hg17|chr8 (91006102-91006937)
               

               
               2-857, gnl|Hg17|chr8 (91006145-91006997)
               

               
               2-857, gnl|loxAfr1|scaffold_114205 (3388-4219)
               

               
               2-857, gnl|mm7|chr4 (15925953-15925117)
               

               
               2-857, gnl|Mm7|chr4 (15925908-15925056)
               

               
               2-857, gnl|monDom2|scaffold_3 (77201946-77201108)
               

               
               2-857, gnl|oryCun1|scaffold_200469 (47442-46607)
               

               
               2-857, gnl|panTro1|chr7 (93225259-93226094)
               

               
               2-857, gnl|rheMac2|chr8 (92572510-92573345)
               

               
               2-857, gnl|rn3|chr5 (30584037-30583201)
               

               
               2-857, gnl|tetNig1|chr8 (7600524-7601514)
               

               
               2-857, gnl|xenTro1|scaffold_59 (2725875-2725040)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-857, gnl|bosTau2|chr14 (46013055-46012200)
               

               
               2-857, gnl|canFam2|chr29 (38393333-38394168)
               

               
               2-857, gnl|danRer3|chr16 (27764204-27763264)
               

               
               2-857, gnl|dasNov1|scaffold_224808 (3175-4013)
               

               
               2-857, gnl|echTel1|scaffold_36376 (2408-1576)
               

               
               2-857, gnl|fr1|chrUn (62428061-62429028)
               

               
               2-857, gnl|galGal2|chr2 (123700759-123701597)
               

               
               2-857, gnl|hg17|chr8 (91006102-91006937)
               

               
               2-857, gnl|Hg17|chr8 (91006145-91006997)
               

               
               2-857, gnl|loxAfr1|scaffold_114205 (3388-4219)
               

               
               2-857, gnl|mm7|chr4 (15925953-15925117)
               

               
               2-857, gnl|Mm7|chr4 (15925908-15925056)
               

               
               2-857, gnl|monDom2|scaffold_3 (77201946-77201108)
               

               
               2-857, gnl|oryCun1|scaffold_200469 (47442-46607)
               

               
               2-857, gnl|panTro1|chr7 (93225259-93226094)
               

               
               2-857, gnl|rheMac2|chr8 (92572510-92573345)
               

               
               2-857, gnl|rn3|chr5 (30584037-30583201)
               

               
               2-857, gnl|tetNig1|chr8 (7600524-7601514)
               

               
               2-857, gnl|xenTro1|scaffold_59 (2725875-2725040)

	2-120, - strand, RNAz p=0.604629
	281-560, - strand, RNAz p=0.755313

	2-857, gnl\|bosTau2\|chr14 (46013055-46012200)
	2-857, gnl\|canFam2\|chr29 (38393333-38394168)
	2-857, gnl\|danRer3\|chr16 (27764204-27763264)
	2-857, gnl\|dasNov1\|scaffold_224808 (3175-4013)
	2-857, gnl\|echTel1\|scaffold_36376 (2408-1576)
	2-857, gnl\|fr1\|chrUn (62428061-62429028)
	2-857, gnl\|galGal2\|chr2 (123700759-123701597)
	2-857, gnl\|hg17\|chr8 (91006102-91006937)
	2-857, gnl\|Hg17\|chr8 (91006145-91006997)
	2-857, gnl\|loxAfr1\|scaffold_114205 (3388-4219)
	2-857, gnl\|mm7\|chr4 (15925953-15925117)
	2-857, gnl\|Mm7\|chr4 (15925908-15925056)
	2-857, gnl\|monDom2\|scaffold_3 (77201946-77201108)
	2-857, gnl\|oryCun1\|scaffold_200469 (47442-46607)
	2-857, gnl\|panTro1\|chr7 (93225259-93226094)
	2-857, gnl\|rheMac2\|chr8 (92572510-92573345)
	2-857, gnl\|rn3\|chr5 (30584037-30583201)
	2-857, gnl\|tetNig1\|chr8 (7600524-7601514)
	2-857, gnl\|xenTro1\|scaffold_59 (2725875-2725040)