Non-Coding RNA Search

Ss1.1-Pig4-TMW8063A17.3

Sequence:


               
               ACTTTTTTAGGGTCTCATTTAATGGCCCTGTTTTTCCTTATTATATTTAATGATCGGGTA
GCATTTAGTACACAAGCTCTTCTGTTCTCAGGCTGCCTGCTGGAGAAATCACCATAAATT
ATCTGCTGTCTACATGGTACAAGGCTCACTGACTCTGATACTTGTTAATTTCTTTTTGTT
TTGTTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCTTTAGCCACAGCTGTCTCAAGACT
TCTGATCTTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGAATTTTTACACTATAGTAAT
TTGCATTCCCACATAAGTTGAGTGTTATGAAAACATTCCTTCAAAGCTATTTGTGCTACA
AAAAATATGCCAGAACCTCATAGACAAAGCCATTGCTATAAATGTCATTCCAATGTCAAA
GCTGGATAAAAGACTACCATAACCACTTTCCCTTCCAGCAGACCCAGCTCATTTATATAT
TATGCTGTTCTTGGCATCTTGAAACACCTATTTCTACTCAGGTACTCATTTTCCTATTAG
TCATTCTTTTTAAAACCAGTTTTCCTCTAAGAGGGGAAATTTCACTTAACTTCTTATATC
TGAATAACTTTGAATGTTTGTTTCCCCATTTGCTTTTACCTCTACTGTATTGTCATCTCA
AATGGCATCTAAATCCAGTTGTGTTTCATTCCAAAAGTTTTCATTCCCTCCCATTTCACT
TAATTTATCCTCCACTGTTCTGGTTTCTGGTCTTTTCCTCTTTATGTCCTATTTTACTTG
CTTAGGGAGCTTAAAGGATTTTCTAAGACCTAATATTTGGTTCCTGCACTGGAGCCATAG
TTATATTGCAGAGAAGAGTAGAAAATGGGTTCAACTCCTGTTTCATTCCACCAACACCTT
CTTGAGTCTCATCATCAGCTGATAGATGATGCCTTACAGGTTGCATAGCACTGGAACTTG
AATAGAGTAATGGCTCTACTGTCAGGGTTTTTCTGGGCTCATTCTTCCACTGACTTAATT
ATGATCTATGCCTAACCGAGCCCTAGTACAACTATTTTGCAGAATGGCCTAGAGTTACTA
TAGCACATATTGAGACATAGTTGTACTCCCCAGTAGATAGGAACTGACTCCAACAATAAA
CTTTGATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTTTAGGGTCTCATTTAATGGCCCTGTTTTTCCTTATTATATTTAATGATCGGGTA
GCATTTAGTACACAAGCTCTTCTGTTCTCAGGCTGCCTGCTGGAGAAATCACCATAAATT
ATCTGCTGTCTACATGGTACAAGGCTCACTGACTCTGATACTTGTTAATTTCTTTTTGTT
TTGTTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCTTTAGCCACAGCTGTCTCAAGACT
TCTGATCTTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGAATTTTTACACTATAGTAAT
TTGCATTCCCACATAAGTTGAGTGTTATGAAAACATTCCTTCAAAGCTATTTGTGCTACA
AAAAATATGCCAGAACCTCATAGACAAAGCCATTGCTATAAATGTCATTCCAATGTCAAA
GCTGGATAAAAGACTACCATAACCACTTTCCCTTCCAGCAGACCCAGCTCATTTATATAT
TATGCTGTTCTTGGCATCTTGAAACACCTATTTCTACTCAGGTACTCATTTTCCTATTAG
TCATTCTTTTTAAAACCAGTTTTCCTCTAAGAGGGGAAATTTCACTTAACTTCTTATATC
TGAATAACTTTGAATGTTTGTTTCCCCATTTGCTTTTACCTCTACTGTATTGTCATCTCA
AATGGCATCTAAATCCAGTTGTGTTTCATTCCAAAAGTTTTCATTCCCTCCCATTTCACT
TAATTTATCCTCCACTGTTCTGGTTTCTGGTCTTTTCCTCTTTATGTCCTATTTTACTTG
CTTAGGGAGCTTAAAGGATTTTCTAAGACCTAATATTTGGTTCCTGCACTGGAGCCATAG
TTATATTGCAGAGAAGAGTAGAAAATGGGTTCAACTCCTGTTTCATTCCACCAACACCTT
CTTGAGTCTCATCATCAGCTGATAGATGATGCCTTACAGGTTGCATAGCACTGGAACTTG
AATAGAGTAATGGCTCTACTGTCAGGGTTTTTCTGGGCTCATTCTTCCACTGACTTAATT
ATGATCTATGCCTAACCGAGCCCTAGTACAACTATTTTGCAGAATGGCCTAGAGTTACTA
TAGCACATATTGAGACATAGTTGTACTCCCCAGTAGATAGGAACTGACTCCAACAATAAA
CTTTGATAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               942-1061, - strand, RNAz p=0.553944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               942-1061, - strand, RNAz p=0.553944

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               876-1152, gnl|bosTau2|chr26 (27163700-27163989)
               

               
               876-1152, gnl|Hg17|chr1 (163555064-163555360)
               

               
               876-1152, gnl|Mm7|chr1 (166365847-166365583)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               876-1152, gnl|bosTau2|chr26 (27163700-27163989)
               

               
               876-1152, gnl|Hg17|chr1 (163555064-163555360)
               

               
               876-1152, gnl|Mm7|chr1 (166365847-166365583)

	876-1152, gnl\|bosTau2\|chr26 (27163700-27163989)
	876-1152, gnl\|Hg17\|chr1 (163555064-163555360)
	876-1152, gnl\|Mm7\|chr1 (166365847-166365583)