Ss1.1-Pig4-TMW8063B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTTTCAAACGGCTTGGAGAAGCCCCTCGGTTCTGACCCGGCGGAGGAATTACTCTTAA CTCTAAGGAGAAACTGGAAGCACAATGGGAGATGATAGTGAGTGGATGAAACTGCCAGTT GATCAGAAATGTGAACATAAGCTGTGGAAAGCAAGGTTAAGTGGATATGAAGAGGCCCTG AAGATCTTCCAGAAAGTAAAGGATGAAAAGAGCCCAGAATGGTCCAAATTTTTAGGCTTG ATCAAAAAATTTGTGACTGATTCCAATGCAGTGGTTCAGTTGAAAGGATTAGAAGCTGCA CTTGTTTATGTTGAAAATGCCCATGTAGCAGGAAAAACCACGGGAGAAGTGGTATCAGGT GTTGTAAGTAAAGTGTTCAACCAACCCAAAGCCAAAGCCAAGGAGCTAGGCATTGAGATC TGTCTAATGTACATAGAGATTGAGAAAGGAGAGGCTGTACAAGAAGAGCTTCTAAAAGGC CTGGACAATAAGAACCCCAAGATCATAGTGGCTTGTATAGAGACACTGAGGAAAGCCTTA AGTGAATTTGGTTCCAAAATCATCTTACTGAAGCCAATTATCAAAGTGTTGCCAAAACTC TTTGAGTCTCGAGAGAAGGCTGTTCGAGATGAAGCCAAACTAATTGCTGTGGAGATTTAT AGATGGATTCGAGATGCTCTGAGACCCCCATTGCAAAATATAAATTCTGTCCAGTTGAAA GAACTAGAAGAAGAATGGGTCAAACTGCCAACAGGTGCTCCTAAACCAAGTAGGTTTTTG CGTTCCCAGCAAGAACTAGAAGCTAAATTGGAACAGCAGCAGTCTGCTGGTGGGGATGCT GAGGGAGGTGGTGACGATGGTGATGAGGTACCACAGATTGATGCATATGAACTTTTGGAA GCAGTAGAAATTCTTTCAAAACTTCCCAAAGACTTTTATGACAAAATTGAGGCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTTTCAAACGGCTTGGAGAAGCCCCTCGGTTCTGACCCGGCGGAGGAATTACTCTTAA CTCTAAGGAGAAACTGGAAGCACAATGGGAGATGATAGTGAGTGGATGAAACTGCCAGTT GATCAGAAATGTGAACATAAGCTGTGGAAAGCAAGGTTAAGTGGATATGAAGAGGCCCTG AAGATCTTCCAGAAAGTAAAGGATGAAAAGAGCCCAGAATGGTCCAAATTTTTAGGCTTG ATCAAAAAATTTGTGACTGATTCCAATGCAGTGGTTCAGTTGAAAGGATTAGAAGCTGCA CTTGTTTATGTTGAAAATGCCCATGTAGCAGGAAAAACCACGGGAGAAGTGGTATCAGGT GTTGTAAGTAAAGTGTTCAACCAACCCAAAGCCAAAGCCAAGGAGCTAGGCATTGAGATC TGTCTAATGTACATAGAGATTGAGAAAGGAGAGGCTGTACAAGAAGAGCTTCTAAAAGGC CTGGACAATAAGAACCCCAAGATCATAGTGGCTTGTATAGAGACACTGAGGAAAGCCTTA AGTGAATTTGGTTCCAAAATCATCTTACTGAAGCCAATTATCAAAGTGTTGCCAAAACTC TTTGAGTCTCGAGAGAAGGCTGTTCGAGATGAAGCCAAACTAATTGCTGTGGAGATTTAT AGATGGATTCGAGATGCTCTGAGACCCCCATTGCAAAATATAAATTCTGTCCAGTTGAAA GAACTAGAAGAAGAATGGGTCAAACTGCCAACAGGTGCTCCTAAACCAAGTAGGTTTTTG CGTTCCCAGCAAGAACTAGAAGCTAAATTGGAACAGCAGCAGTCTGCTGGTGGGGATGCT GAGGGAGGTGGTGACGATGGTGATGAGGTACCACAGATTGATGCATATGAACTTTTGGAA GCAGTAGAAATTCTTTCAAAACTTCCCAAAGACTTTTATGACAAAATTGAGGCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 712-830, - strand, RNAz p=0.543098 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 712-830, - strand, RNAz p=0.543098 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 140-335, gnl|bosTau2|chr15 (49472647-49472842) | |
| 140-335, gnl|Hg17|chr11 (46796632-46796437) | |
| 140-335, gnl|Mm7|chr2 (91399488-91399683) | |
| 336-542, gnl|bosTau2|chr15 (49474620-49474826) | |
| 336-542, gnl|canFam2|chr18 (45747920-45747669) | |
| 336-542, gnl|danRer3|chrNA (106191095-106191347) | |
| 336-542, gnl|dasNov1|scaffold_133872 (3731-3493) | |
| 336-542, gnl|echTel1|scaffold_193893 (10382-10137) | |
| 336-542, gnl|fr1|chrUn (231599843-231600062) | |
| 336-542, gnl|galGal2|chr5 (20688546-20688305) | |
| 336-542, gnl|hg17|chr11 (46794294-46794550) | |
| 336-542, gnl|Hg17|chr11 (46794531-46794325) | |
| 336-542, gnl|loxAfr1|scaffold_61745 (7765-8014) | |
| 336-542, gnl|mm7|chr2 (91401499-91401265) | |
| 336-542, gnl|Mm7|chr2 (91401268-91401474) | |
| 336-542, gnl|monDom2|scaffold_33 (12758447-12758678) | |
| 336-542, gnl|panTro1|chr9 (47315872-47316128) | |
| 336-542, gnl|rheMac2|chr14 (25300514-25300258) | |
| 336-542, gnl|tetNig1|chrUn_random (108164368-108164131) | |
| 336-542, gnl|xenTro1|scaffold_76 (2251533-2251773) | |
| 712-849, gnl|bosTau2|chr15 (49478429-49478566) | |
| 712-849, gnl|canFam2|chr18 (45752036-45751840) | |
| 712-849, gnl|danRer3|chrNA (106190640-106190813) | |
| 712-849, gnl|dasNov1|scaffold_169254 (4390-4196) | |
| 712-849, gnl|echTel1|scaffold_282623 (8538-8734) | |
| 712-849, gnl|fr1|chrUn (231599224-231599351) | |
| 712-849, gnl|galGal2|chr5 (20691845-20691688) | |
| 712-849, gnl|hg17|chr11 (46787862-46788056) | |
| 712-849, gnl|Hg17|chr11 (46788003-46787866) | |
| 712-849, gnl|loxAfr1|scaffold_61745 (2888-3081) | |
| 712-849, gnl|mm7|chr2 (91407356-91407164) | |
| 712-849, gnl|Mm7|chr2 (91407213-91407350) | |
| 712-849, gnl|monDom2|scaffold_33 (12753214-12753408) | |
| 712-849, gnl|oryCun1|scaffold_186587 (34296-34161) | |
| 712-849, gnl|panTro1|chr9 (47309376-47309570) | |
| 712-849, gnl|rheMac2|chr14 (25307463-25307267) | |
| 712-849, gnl|tetNig1|chrUn_random (108164826-108164697) | |
| 712-849, gnl|xenTro1|scaffold_76 (2251053-2251185) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-335, gnl|bosTau2|chr15 (49472647-49472842) | |
| 140-335, gnl|Hg17|chr11 (46796632-46796437) | |
| 140-335, gnl|Mm7|chr2 (91399488-91399683) | |
| 336-542, gnl|bosTau2|chr15 (49474620-49474826) | |
| 336-542, gnl|canFam2|chr18 (45747920-45747669) | |
| 336-542, gnl|danRer3|chrNA (106191095-106191347) | |
| 336-542, gnl|dasNov1|scaffold_133872 (3731-3493) | |
| 336-542, gnl|echTel1|scaffold_193893 (10382-10137) | |
| 336-542, gnl|fr1|chrUn (231599843-231600062) | |
| 336-542, gnl|galGal2|chr5 (20688546-20688305) | |
| 336-542, gnl|hg17|chr11 (46794294-46794550) | |
| 336-542, gnl|Hg17|chr11 (46794531-46794325) | |
| 336-542, gnl|loxAfr1|scaffold_61745 (7765-8014) | |
| 336-542, gnl|mm7|chr2 (91401499-91401265) | |
| 336-542, gnl|Mm7|chr2 (91401268-91401474) | |
| 336-542, gnl|monDom2|scaffold_33 (12758447-12758678) | |
| 336-542, gnl|panTro1|chr9 (47315872-47316128) | |
| 336-542, gnl|rheMac2|chr14 (25300514-25300258) | |
| 336-542, gnl|tetNig1|chrUn_random (108164368-108164131) | |
| 336-542, gnl|xenTro1|scaffold_76 (2251533-2251773) | |
| 712-849, gnl|bosTau2|chr15 (49478429-49478566) | |
| 712-849, gnl|canFam2|chr18 (45752036-45751840) | |
| 712-849, gnl|danRer3|chrNA (106190640-106190813) | |
| 712-849, gnl|dasNov1|scaffold_169254 (4390-4196) | |
| 712-849, gnl|echTel1|scaffold_282623 (8538-8734) | |
| 712-849, gnl|fr1|chrUn (231599224-231599351) | |
| 712-849, gnl|galGal2|chr5 (20691845-20691688) | |
| 712-849, gnl|hg17|chr11 (46787862-46788056) | |
| 712-849, gnl|Hg17|chr11 (46788003-46787866) | |
| 712-849, gnl|loxAfr1|scaffold_61745 (2888-3081) | |
| 712-849, gnl|mm7|chr2 (91407356-91407164) | |
| 712-849, gnl|Mm7|chr2 (91407213-91407350) | |
| 712-849, gnl|monDom2|scaffold_33 (12753214-12753408) | |
| 712-849, gnl|oryCun1|scaffold_186587 (34296-34161) | |
| 712-849, gnl|panTro1|chr9 (47309376-47309570) | |
| 712-849, gnl|rheMac2|chr14 (25307463-25307267) | |
| 712-849, gnl|tetNig1|chrUn_random (108164826-108164697) | |
| 712-849, gnl|xenTro1|scaffold_76 (2251053-2251185) |