Non-Coding RNA Search

Ss1.1-Pig4-TMW8063C04.3

Sequence:


               
               CAGGTACCGTCTCCATAGCTTCTTCTTCAGAGTCATCTTCCTCCTCCTCGTCATCCTCGT
CCTCGTCCTCATCCTCATCTTCATCCTCCTCCTCCTCCTCATCATCGGAGGCCGGAGCAG
CAGCAGCAGCAGCTCCTTTCACCACTGCTGGCTCAAAGTCGTCCTCGTCCTCCTCTTCGT
CCTCCTCATCCTCTTCGCTGTCGTCTTCGTCTTCCTCATCACTGTCTTCTTTCTTGGCAT
TCTTGCCATTCTTTGCCCCCTTAGCTGGAGCGGCTGCTCCCTTCTTACCAGAGGTTGCTA
CCAATGCTTTGGCTGGTGTGGCTCCCTTCTTGCCAGGTGTGGCTACTGCTTTGGCAGGTG
TAACTGTCTTCTTGGCTGGTGTAGCCGCTGCCTTTTTGCCAGGAGTGACAACTGCTTTCT
TGGCCGGTGTGGCAGCCGCAACCTTTTTTGTGGGGGAAACCATCACCTTCTTTGCGGGAG
TTGGGGTAGCCTTTTTGCCTTTCTTCTGAGGAATAATAACCTCTTCTCCGCTGCTATCAT
CCTCCTCATCGTCTGACATTTCTTCATCTTCACTGTCTTCTTCTACCTCCTTTGGGGGAG
GAGCCATTTTCTTGGGGTCGCCTTGATTTTTACCGGCCTTTGCGAGCTTTACCATGATGG
CGGCGGAGTGTGTAGCGGGCGAGTGGCGCAGGTGAGCCCAGAGGAACCCAAGCAACCTCG
ATGGCGGCCACTAGAACTGAAGATCCCAGAGCGCGTACGCTTAGCTGCCACTCGAGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTACCGTCTCCATAGCTTCTTCTTCAGAGTCATCTTCCTCCTCCTCGTCATCCTCGT
CCTCGTCCTCATCCTCATCTTCATCCTCCTCCTCCTCCTCATCATCGGAGGCCGGAGCAG
CAGCAGCAGCAGCTCCTTTCACCACTGCTGGCTCAAAGTCGTCCTCGTCCTCCTCTTCGT
CCTCCTCATCCTCTTCGCTGTCGTCTTCGTCTTCCTCATCACTGTCTTCTTTCTTGGCAT
TCTTGCCATTCTTTGCCCCCTTAGCTGGAGCGGCTGCTCCCTTCTTACCAGAGGTTGCTA
CCAATGCTTTGGCTGGTGTGGCTCCCTTCTTGCCAGGTGTGGCTACTGCTTTGGCAGGTG
TAACTGTCTTCTTGGCTGGTGTAGCCGCTGCCTTTTTGCCAGGAGTGACAACTGCTTTCT
TGGCCGGTGTGGCAGCCGCAACCTTTTTTGTGGGGGAAACCATCACCTTCTTTGCGGGAG
TTGGGGTAGCCTTTTTGCCTTTCTTCTGAGGAATAATAACCTCTTCTCCGCTGCTATCAT
CCTCCTCATCGTCTGACATTTCTTCATCTTCACTGTCTTCTTCTACCTCCTTTGGGGGAG
GAGCCATTTTCTTGGGGTCGCCTTGATTTTTACCGGCCTTTGCGAGCTTTACCATGATGG
CGGCGGAGTGTGTAGCGGGCGAGTGGCGCAGGTGAGCCCAGAGGAACCCAAGCAACCTCG
ATGGCGGCCACTAGAACTGAAGATCCCAGAGCGCGTACGCTTAGCTGCCACTCGAGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2147830|pir||I48118

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2147830|pir||I48118

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-493, - strand, RNAz p=0.988405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-493, - strand, RNAz p=0.988405

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-770, gnl|bosTau2|chr7 (68151288-68150542)
               

               
               3-770, gnl|Hg17|chr2 (232151052-232154684)
               

               
               3-770, gnl|Mm7|chr1 (86257387-86260024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-770, gnl|bosTau2|chr7 (68151288-68150542)
               

               
               3-770, gnl|Hg17|chr2 (232151052-232154684)
               

               
               3-770, gnl|Mm7|chr1 (86257387-86260024)

	3-770, gnl\|bosTau2\|chr7 (68151288-68150542)
	3-770, gnl\|Hg17\|chr2 (232151052-232154684)
	3-770, gnl\|Mm7\|chr1 (86257387-86260024)