Ss1.1-Pig4-TMW8063D19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCAACGAAATGTTCAAGTTTAACGAGGAGAACTACGGCGTGAAGACCACCTATGACAG CAGTCTCTCTTCCTACACGGTGCCCCTAGAGAAGGACAACTCGGAAGAATTTCGTCAGCG GGAGCTGCGTGCAGCCCAGTTGGCTCGAGAGATTGAATCGAGCCCCCAATACCGCCTGCG GATCGCCATGGAGAACGATGACGGGCGCACCGAGGAGGAGAAGCACAGTGCAGTTCAGCG ACAGGGGTCAGGGCGGGAGAGCCCCAGCCTGGCGTCTAGGGAGGGAAAGTATATACCTCT ACCCCAGCGAGTGCGGGAAGGTCCCCGGGGAGGAGTTCGGTGCAGTAGTTCTCGAGGCGG CCGGCCTGGCCTGAGCTCTCTGCCACCTCGCGGCCCTCACCATCTTGACAGTAGCAGCCC TGGCCCAGGTTCTGAGACACGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCTAAGGC ACAGCGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCCCCCAGCAGCAGGCCTTCTGGAGA AGCTTCTGTTCCACCTTCCGCAGTGGGCCGGATGTACCCTCCGCGCTCCCCCAAGTCTGC TGCCCCTGCCCCAATCTCAGCTTCCTGTCCTGAGCCTCCCATTGGCTCAGCAGTACCAAT CTCTTCAGCTTCCATCCCCGTGACATCAACAGTTGGGGATCCTGGAGTAGGCTCCATCTC ACCAGCTTCTCCAAAGATCTCACTGACCCCCACAGATGTAAAAGAACTCCCGGCCAAGGA ACCCGGGAGACCTCTGGAGTCCCAGGAGCTGTCCCGGATAGCTGGGAAAGTCCCTGGCCT TCAGAACGAACAGAAACGCTTTCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAATTTAA GCTTCAGCCCAGTAGCTCTCCTGAGACCAGCCTGGATCCTTTTCCTCCTCGAATCTTGAA GGAGGAGGCCAAAGGGAAGGAGAAGGAAGTTGATGGTCTTTTGGCTTCAGAGCCCATGGG GTCCCCCGTTTCCTCCAAGGCAGAATCCGTATCGGATAAGGAGGACAAACCACCCCTGCC AGCAGCAGGAGGCACCGAGGGGCCAGATCAGCCCTCACCACCTTGCCCCAGCCAAACCGG CAGCCCCCCAGTGGGCCTCCTCAAGGGAGATGACAAGGACGAGGGCCCCGTTGCTGAACA AGTGAAGAAGTCAACGTTGAACCCCAATGCCAATGAGTTCAATCCCACTAAGCCTCTGCT CTCTGTGAATAAATCCACCAGTACTCCAACTTCTCCTGGGCCCCGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCAACGAAATGTTCAAGTTTAACGAGGAGAACTACGGCGTGAAGACCACCTATGACAG CAGTCTCTCTTCCTACACGGTGCCCCTAGAGAAGGACAACTCGGAAGAATTTCGTCAGCG GGAGCTGCGTGCAGCCCAGTTGGCTCGAGAGATTGAATCGAGCCCCCAATACCGCCTGCG GATCGCCATGGAGAACGATGACGGGCGCACCGAGGAGGAGAAGCACAGTGCAGTTCAGCG ACAGGGGTCAGGGCGGGAGAGCCCCAGCCTGGCGTCTAGGGAGGGAAAGTATATACCTCT ACCCCAGCGAGTGCGGGAAGGTCCCCGGGGAGGAGTTCGGTGCAGTAGTTCTCGAGGCGG CCGGCCTGGCCTGAGCTCTCTGCCACCTCGCGGCCCTCACCATCTTGACAGTAGCAGCCC TGGCCCAGGTTCTGAGACACGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCTAAGGC ACAGCGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCCCCCAGCAGCAGGCCTTCTGGAGA AGCTTCTGTTCCACCTTCCGCAGTGGGCCGGATGTACCCTCCGCGCTCCCCCAAGTCTGC TGCCCCTGCCCCAATCTCAGCTTCCTGTCCTGAGCCTCCCATTGGCTCAGCAGTACCAAT CTCTTCAGCTTCCATCCCCGTGACATCAACAGTTGGGGATCCTGGAGTAGGCTCCATCTC ACCAGCTTCTCCAAAGATCTCACTGACCCCCACAGATGTAAAAGAACTCCCGGCCAAGGA ACCCGGGAGACCTCTGGAGTCCCAGGAGCTGTCCCGGATAGCTGGGAAAGTCCCTGGCCT TCAGAACGAACAGAAACGCTTTCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAATTTAA GCTTCAGCCCAGTAGCTCTCCTGAGACCAGCCTGGATCCTTTTCCTCCTCGAATCTTGAA GGAGGAGGCCAAAGGGAAGGAGAAGGAAGTTGATGGTCTTTTGGCTTCAGAGCCCATGGG GTCCCCCGTTTCCTCCAAGGCAGAATCCGTATCGGATAAGGAGGACAAACCACCCCTGCC AGCAGCAGGAGGCACCGAGGGGCCAGATCAGCCCTCACCACCTTGCCCCAGCCAAACCGG CAGCCCCCCAGTGGGCCTCCTCAAGGGAGATGACAAGGACGAGGGCCCCGTTGCTGAACA AGTGAAGAAGTCAACGTTGAACCCCAATGCCAATGAGTTCAATCCCACTAAGCCTCTGCT CTCTGTGAATAAATCCACCAGTACTCCAACTTCTCCTGGGCCCCGGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 600-719, - strand, RNAz p=0.939609 | |
| 620-732, + strand, RNAz p=0.694013 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 600-719, - strand, RNAz p=0.939609 | |
| 620-732, + strand, RNAz p=0.694013 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 71-280, gnl|bosTau2|chr25 (24930246-24930036) | |
| 71-280, gnl|canFam2|chr6 (21360350-21360150) | |
| 71-280, gnl|danRer3|chr5 (49320760-49320570) | |
| 71-280, gnl|dasNov1|scaffold_11228 (43798-43598) | |
| 71-280, gnl|echTel1|scaffold_306327 (4192-4388) | |
| 71-280, gnl|fr1|chrUn (221048472-221048273) | |
| 71-280, gnl|Hg17|chr16 (28748661-28748881) | |
| 71-280, gnl|hg17|chr7 (16398651-16398851) | |
| 71-280, gnl|loxAfr1|scaffold_48966 (5828-6024) | |
| 71-280, gnl|mm7|chr7 (122594663-122594863) | |
| 71-280, gnl|Mm7|chr7 (122594872-122594662) | |
| 71-280, gnl|monDom2|scaffold_5 (119436229-119436429) | |
| 71-280, gnl|oryCun1|scaffold_214919 (95549-95750) | |
| 71-280, gnl|panTro1|chr6 (17283132-17283328) | |
| 71-280, gnl|rheMac2|chr3 (109527934-109527735) | |
| 71-280, gnl|rn3|chr1 (185792197-185792397) | |
| 71-280, gnl|tetNig1|chr2 (5432749-5432963) | |
| 71-280, gnl|xenTro1|scaffold_592 (450098-450299) | |
| 454-556, gnl|bosTau2|chr25 (24928904-24928802) | |
| 454-556, gnl|Hg17|chr16 (28749782-28749884) | |
| 454-556, gnl|Mm7|chr7 (122593924-122593822) | |
| 561-764, gnl|bosTau2|chr25 (24928256-24928052) | |
| 561-764, gnl|canFam2|chr6 (21362614-21362860) | |
| 561-764, gnl|dasNov1|scaffold_11228 (45411-45653) | |
| 561-764, gnl|echTel1|scaffold_306327 (2678-2436) | |
| 561-764, gnl|hg17|chr16 (28751006-28751248) | |
| 561-764, gnl|Hg17|chr16 (28751024-28751228) | |
| 561-764, gnl|loxAfr1|scaffold_48966 (3958-3716) | |
| 561-764, gnl|mm7|chr7 (122593209-122592964) | |
| 561-764, gnl|Mm7|chr7 (122593189-122592988) | |
| 561-764, gnl|monDom2|scaffold_5 (119435259-119435016) | |
| 561-764, gnl|oryCun1|scaffold_214919 (94148-93907) | |
| 561-764, gnl|panTro1|chr18 (29467563-29467805) | |
| 561-764, gnl|rheMac2|chr20 (27018166-27017924) | |
| 561-764, gnl|rn3|chr1 (185790465-185790220) | |
| 561-764, gnl|xenTro1|scaffold_592 (448785-448574) | |
| 900-1204, gnl|bosTau2|chr25 (24927407-24927103) | |
| 900-1204, gnl|Hg17|chr16 (28751879-28752183) | |
| 900-1204, gnl|Mm7|chr7 (122592215-122591895) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-280, gnl|bosTau2|chr25 (24930246-24930036) | |
| 71-280, gnl|canFam2|chr6 (21360350-21360150) | |
| 71-280, gnl|danRer3|chr5 (49320760-49320570) | |
| 71-280, gnl|dasNov1|scaffold_11228 (43798-43598) | |
| 71-280, gnl|echTel1|scaffold_306327 (4192-4388) | |
| 71-280, gnl|fr1|chrUn (221048472-221048273) | |
| 71-280, gnl|Hg17|chr16 (28748661-28748881) | |
| 71-280, gnl|hg17|chr7 (16398651-16398851) | |
| 71-280, gnl|loxAfr1|scaffold_48966 (5828-6024) | |
| 71-280, gnl|mm7|chr7 (122594663-122594863) | |
| 71-280, gnl|Mm7|chr7 (122594872-122594662) | |
| 71-280, gnl|monDom2|scaffold_5 (119436229-119436429) | |
| 71-280, gnl|oryCun1|scaffold_214919 (95549-95750) | |
| 71-280, gnl|panTro1|chr6 (17283132-17283328) | |
| 71-280, gnl|rheMac2|chr3 (109527934-109527735) | |
| 71-280, gnl|rn3|chr1 (185792197-185792397) | |
| 71-280, gnl|tetNig1|chr2 (5432749-5432963) | |
| 71-280, gnl|xenTro1|scaffold_592 (450098-450299) | |
| 454-556, gnl|bosTau2|chr25 (24928904-24928802) | |
| 454-556, gnl|Hg17|chr16 (28749782-28749884) | |
| 454-556, gnl|Mm7|chr7 (122593924-122593822) | |
| 561-764, gnl|bosTau2|chr25 (24928256-24928052) | |
| 561-764, gnl|canFam2|chr6 (21362614-21362860) | |
| 561-764, gnl|dasNov1|scaffold_11228 (45411-45653) | |
| 561-764, gnl|echTel1|scaffold_306327 (2678-2436) | |
| 561-764, gnl|hg17|chr16 (28751006-28751248) | |
| 561-764, gnl|Hg17|chr16 (28751024-28751228) | |
| 561-764, gnl|loxAfr1|scaffold_48966 (3958-3716) | |
| 561-764, gnl|mm7|chr7 (122593209-122592964) | |
| 561-764, gnl|Mm7|chr7 (122593189-122592988) | |
| 561-764, gnl|monDom2|scaffold_5 (119435259-119435016) | |
| 561-764, gnl|oryCun1|scaffold_214919 (94148-93907) | |
| 561-764, gnl|panTro1|chr18 (29467563-29467805) | |
| 561-764, gnl|rheMac2|chr20 (27018166-27017924) | |
| 561-764, gnl|rn3|chr1 (185790465-185790220) | |
| 561-764, gnl|xenTro1|scaffold_592 (448785-448574) | |
| 900-1204, gnl|bosTau2|chr25 (24927407-24927103) | |
| 900-1204, gnl|Hg17|chr16 (28751879-28752183) | |
| 900-1204, gnl|Mm7|chr7 (122592215-122591895) |