Ss1.1-Pig4-TMW8063D21.3
|
AATAATGCAGGTCTGATTTTATAATGTGATCTCCTGCAGAACCTGGAGGGAAGCACAAAC
TGTGAGCACAGGAATCTTTAGGGACGGCGTAGTCCTCTGGGTATTTGTCTCTTCATCAGC
TGCTTAGTCAGATGGAGTGTTTTCTTAAGTGCTTCTGAAATGCACAGCCCAGTTTTTATT
TTGAAATCATTCCTTCCGTCTTCTCTCCCCTCTTCCATTACTTTGATTACCTTGATGGGA
TGTTCAAGCTGTGCAGTCTTGTCCTTTTATTTCCATAGCCTGGGAAGCCAGTTTGAAGAT
TAACTTTAGGTGCACAGGGAATCTGATCTGCTTGGCTAGAAGTCACCCATCAAGATGAAA
CACGTGTCAACAAAGGCCCCACTAGACTTGGGCACCTGAATGAAGGTAACTGAATCTCGT
GGCATCTTCAGTGGAAACTGGGGTGAAAATTTAGCAGAGCATGAGTATGAGGAGGTAGAG
ACAGAAAGAGAAGGGGCGGGAGGAGAGAGCGGATGAGAATGTATCCAGAGGTATACAGTA
AATAAAACTCATGAATTAAGGAAATCTTCAAAGCTGAATTATAGAATCCTTGTTCCGAGA
GGGTGGCTACTGGGGAATAGGACATGAGCTTACCAAGTCGCTTCATTAGGAAGCTACTAG
AGTTTAGGTGATGGAATTTGATGACAAGGGCCTTTTCCTCTGCCCTTCTGTATTAGCAGA
TCAGGGGGAAAAAAAAATGAAGAAATAGTTTTGTATAGAAAATGGCAGTTGGGGAGTTCC
TGTCATGGTGCAGTGGTTAATGAACCCGCAACCTCA------------------------
------------------------GGTCCTTGTCTATTTTATATACAGTAGTGTGTATAT
GTCATTCCCATTCTCCTAATTTACCCCCAGTCCCCCCAACACACATGACTTCCCTTTGGT
AACTGTAAGTTTACTTTTGAAATCTGTGAGTTTCTTTCTGTTTTGTAAATAAGTTCTTTT
TATCATTTAAAAAATTAGATTCCACATATAAGTGGTATTAAAAAAACACTTTTCATTTTA
CTGTATGTAATT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATAATGCAGGTCTGATTTTATAATGTGATCTCCTGCAGAACCTGGAGGGAAGCACAAAC
TGTGAGCACAGGAATCTTTAGGGACGGCGTAGTCCTCTGGGTATTTGTCTCTTCATCAGC
TGCTTAGTCAGATGGAGTGTTTTCTTAAGTGCTTCTGAAATGCACAGCCCAGTTTTTATT
TTGAAATCATTCCTTCCGTCTTCTCTCCCCTCTTCCATTACTTTGATTACCTTGATGGGA
TGTTCAAGCTGTGCAGTCTTGTCCTTTTATTTCCATAGCCTGGGAAGCCAGTTTGAAGAT
TAACTTTAGGTGCACAGGGAATCTGATCTGCTTGGCTAGAAGTCACCCATCAAGATGAAA
CACGTGTCAACAAAGGCCCCACTAGACTTGGGCACCTGAATGAAGGTAACTGAATCTCGT
GGCATCTTCAGTGGAAACTGGGGTGAAAATTTAGCAGAGCATGAGTATGAGGAGGTAGAG
ACAGAAAGAGAAGGGGCGGGAGGAGAGAGCGGATGAGAATGTATCCAGAGGTATACAGTA
AATAAAACTCATGAATTAAGGAAATCTTCAAAGCTGAATTATAGAATCCTTGTTCCGAGA
GGGTGGCTACTGGGGAATAGGACATGAGCTTACCAAGTCGCTTCATTAGGAAGCTACTAG
AGTTTAGGTGATGGAATTTGATGACAAGGGCCTTTTCCTCTGCCCTTCTGTATTAGCAGA
TCAGGGGGAAAAAAAAATGAAGAAATAGTTTTGTATAGAAAATGGCAGTTGGGGAGTTCC
TGTCATGGTGCAGTGGTTAATGAACCCGCAACCTCA------------------------
------------------------GGTCCTTGTCTATTTTATATACAGTAGTGTGTATAT
GTCATTCCCATTCTCCTAATTTACCCCCAGTCCCCCCAACACACATGACTTCCCTTTGGT
AACTGTAAGTTTACTTTTGAAATCTGTGAGTTTCTTTCTGTTTTGTAAATAAGTTCTTTT
TATCATTTAAAAAATTAGATTCCACATATAAGTGGTATTAAAAAAACACTTTTCATTTTA
CTGTATGTAATT
|
|
1-515, gnl|bosTau2|chr19 (8963407-8962899) |
|
1-515, gnl|Hg17|chr17 (30420829-30420345) |
|
1-515, gnl|Mm7|chr11 (82933350-82932891) |
| |
|
540-763, gnl|bosTau2|chr19 (8962460-8962232) |
|
540-763, gnl|canFam2|chr9 (41608547-41608142) |
|
540-763, gnl|dasNov1|scaffold_22848 (4702-5121) |
|
540-763, gnl|echTel1|scaffold_311326 (42034-42438) |
|
540-763, gnl|hg17|chr17 (30419778-30420198) |
|
540-763, gnl|Hg17|chr17 (30420280-30420042) |
|
540-763, gnl|loxAfr1|scaffold_618 (64862-65239) |
|
540-763, gnl|mm7|chr11 (82932225-82932612) |
|
540-763, gnl|Mm7|chr11 (82932691-82932464) |
|
540-763, gnl|monDom2|scaffold_44 (7611249-7610838) |
|
540-763, gnl|oryCun1|scaffold_206206 (4034-4412) |
|
540-763, gnl|panTro1|chr19 (33941370-33941788) |
|
540-763, gnl|rheMac2|chr16 (30366878-30367305) |
|
540-763, gnl|rn3|chr10 (71080643-71081033) |
| |
|
822-1039, gnl|bosTau2|chr11 (62155654-62155440) |
| |
|
831-1011, gnl|bosTau2|chr9 (7409771-7409952) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-515, gnl|bosTau2|chr19 (8963407-8962899) |
|
1-515, gnl|Hg17|chr17 (30420829-30420345) |
|
1-515, gnl|Mm7|chr11 (82933350-82932891) |
| |
|
540-763, gnl|bosTau2|chr19 (8962460-8962232) |
|
540-763, gnl|canFam2|chr9 (41608547-41608142) |
|
540-763, gnl|dasNov1|scaffold_22848 (4702-5121) |
|
540-763, gnl|echTel1|scaffold_311326 (42034-42438) |
|
540-763, gnl|hg17|chr17 (30419778-30420198) |
|
540-763, gnl|Hg17|chr17 (30420280-30420042) |
|
540-763, gnl|loxAfr1|scaffold_618 (64862-65239) |
|
540-763, gnl|mm7|chr11 (82932225-82932612) |
|
540-763, gnl|Mm7|chr11 (82932691-82932464) |
|
540-763, gnl|monDom2|scaffold_44 (7611249-7610838) |
|
540-763, gnl|oryCun1|scaffold_206206 (4034-4412) |
|
540-763, gnl|panTro1|chr19 (33941370-33941788) |
|
540-763, gnl|rheMac2|chr16 (30366878-30367305) |
|
540-763, gnl|rn3|chr10 (71080643-71081033) |
| |
|
822-1039, gnl|bosTau2|chr11 (62155654-62155440) |
| |
|
831-1011, gnl|bosTau2|chr9 (7409771-7409952) |
