Non-Coding RNA Search

Ss1.1-Pig4-TMW8063H17.3

Sequence:


               
               TCCTCTTCCTCTTATTCGGCCAAAGGGGCAGGGTCCTCTTATGTAAGGATGTGGAAAACC
AGCTCTCCCCTCCTCAGGGCCCCAGGAGCCAGAGGGACCCTGGCGTTCTGGGACTGAATG
GGGCAGGATGGGGAGAATTGGGTCCGCTGGGCCGAGATGAGAAACGTGTGGACGTGAAGG
AACTGGAGCAGCTGTTCCCCCGAGCAGGGGCCGTGGGGCAGCCGCACCCCAGGCCTCACC
CAAGACCCATGGATCCCGAGGCCCCTGCCCTGTGCGAGGAGACCCAGCTCTCCATGCTGT
CCCTTCAGAGGTGTGGTGTCCTGGAGGAGATGGCATCGGAGGCCAAGGCCCCCTGCGTGG
GCCCCCCTGCTGCCCTGCCACCCCAGGACAGAGACCCTGGCCTCCTGAGTGAAGGACCAG
CTGCCCAGCCAGCTCACTCAGGCCAGTAGCCAGTGTCCGGCCCTTGAAGGAACAACCACC
CCATTCTCAGGTCAAAGGCAAGATTTCTCCTGTCATGTGGGATTCGGATGGGGGCTTCCC
AGCATTTCTGTCCTGCCTGTTCCTCAGATTGTCAAGATCTACAGTTGCCTTGGCAGGGAA
CCCCTCCAAGGACCCAGAGGGGATCCTGCGGGAGCACACCCCCCCACCAGGTGAAGCCCC
CCTCCCCTGTCGCCACCTCTGCTGGAACCCACATGACGTGGAACTGAACTAATATTTTCC
TTTAAAAAAATAACACACTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCTTCCTCTTATTCGGCCAAAGGGGCAGGGTCCTCTTATGTAAGGATGTGGAAAACC
AGCTCTCCCCTCCTCAGGGCCCCAGGAGCCAGAGGGACCCTGGCGTTCTGGGACTGAATG
GGGCAGGATGGGGAGAATTGGGTCCGCTGGGCCGAGATGAGAAACGTGTGGACGTGAAGG
AACTGGAGCAGCTGTTCCCCCGAGCAGGGGCCGTGGGGCAGCCGCACCCCAGGCCTCACC
CAAGACCCATGGATCCCGAGGCCCCTGCCCTGTGCGAGGAGACCCAGCTCTCCATGCTGT
CCCTTCAGAGGTGTGGTGTCCTGGAGGAGATGGCATCGGAGGCCAAGGCCCCCTGCGTGG
GCCCCCCTGCTGCCCTGCCACCCCAGGACAGAGACCCTGGCCTCCTGAGTGAAGGACCAG
CTGCCCAGCCAGCTCACTCAGGCCAGTAGCCAGTGTCCGGCCCTTGAAGGAACAACCACC
CCATTCTCAGGTCAAAGGCAAGATTTCTCCTGTCATGTGGGATTCGGATGGGGGCTTCCC
AGCATTTCTGTCCTGCCTGTTCCTCAGATTGTCAAGATCTACAGTTGCCTTGGCAGGGAA
CCCCTCCAAGGACCCAGAGGGGATCCTGCGGGAGCACACCCCCCCACCAGGTGAAGCCCC
CCTCCCCTGTCGCCACCTCTGCTGGAACCCACATGACGTGGAACTGAACTAATATTTTCC
TTTAAAAAAATAACACACTTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4103621|gb|AAD12124.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4103621|gb|AAD12124.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               30-188, + strand, RNAz p=0.994466
               

               
               74-240, - strand, RNAz p=0.964099
               

               
               381-473, - strand, RNAz p=0.965051
               

               
               582-686, - strand, RNAz p=0.927488

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-188, + strand, RNAz p=0.994466
               

               
               74-240, - strand, RNAz p=0.964099
               

               
               381-473, - strand, RNAz p=0.965051
               

               
               582-686, - strand, RNAz p=0.927488

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               30-240, gnl|bosTau2|chr10 (8716857-8716651)
               

               
               30-240, gnl|canFam2|chr30 (32699152-32699389)
               

               
               30-240, gnl|echTel1|scaffold_293494 (1678-1903)
               

               
               30-240, gnl|galGal2|chr10 (18525250-18525474)
               

               
               30-240, gnl|hg17|chr15 (63408776-63409000)
               

               
               30-240, gnl|Hg17|chr15 (63408990-63408781)
               

               
               30-240, gnl|loxAfr1|scaffold_47198 (9901-10122)
               

               
               30-240, gnl|mm7|chr9 (65213888-65213663)
               

               
               30-240, gnl|Mm7|chr9 (65213672-65213881)
               

               
               30-240, gnl|monDom2|scaffold_12 (47871762-47871538)
               

               
               30-240, gnl|panTro1|chr16 (63896599-63896823)
               

               
               30-240, gnl|rheMac2|chr7 (43815095-43815319)
               

               
               30-240, gnl|rn3|chr8 (69452261-69452036)
               


               
               372-744, gnl|bosTau2|chr10 (8716308-8715949)
               

               
               372-744, gnl|Hg17|chr15 (63408401-63407989)
               

               
               372-744, gnl|Mm7|chr9 (65214865-65215208)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-240, gnl|bosTau2|chr10 (8716857-8716651)
               

               
               30-240, gnl|canFam2|chr30 (32699152-32699389)
               

               
               30-240, gnl|echTel1|scaffold_293494 (1678-1903)
               

               
               30-240, gnl|galGal2|chr10 (18525250-18525474)
               

               
               30-240, gnl|hg17|chr15 (63408776-63409000)
               

               
               30-240, gnl|Hg17|chr15 (63408990-63408781)
               

               
               30-240, gnl|loxAfr1|scaffold_47198 (9901-10122)
               

               
               30-240, gnl|mm7|chr9 (65213888-65213663)
               

               
               30-240, gnl|Mm7|chr9 (65213672-65213881)
               

               
               30-240, gnl|monDom2|scaffold_12 (47871762-47871538)
               

               
               30-240, gnl|panTro1|chr16 (63896599-63896823)
               

               
               30-240, gnl|rheMac2|chr7 (43815095-43815319)
               

               
               30-240, gnl|rn3|chr8 (69452261-69452036)
               


               
               372-744, gnl|bosTau2|chr10 (8716308-8715949)
               

               
               372-744, gnl|Hg17|chr15 (63408401-63407989)
               

               
               372-744, gnl|Mm7|chr9 (65214865-65215208)

	30-188, + strand, RNAz p=0.994466
	74-240, - strand, RNAz p=0.964099
	381-473, - strand, RNAz p=0.965051
	582-686, - strand, RNAz p=0.927488

	30-240, gnl\|bosTau2\|chr10 (8716857-8716651)
	30-240, gnl\|canFam2\|chr30 (32699152-32699389)
	30-240, gnl\|echTel1\|scaffold_293494 (1678-1903)
	30-240, gnl\|galGal2\|chr10 (18525250-18525474)
	30-240, gnl\|hg17\|chr15 (63408776-63409000)
	30-240, gnl\|Hg17\|chr15 (63408990-63408781)
	30-240, gnl\|loxAfr1\|scaffold_47198 (9901-10122)
	30-240, gnl\|mm7\|chr9 (65213888-65213663)
	30-240, gnl\|Mm7\|chr9 (65213672-65213881)
	30-240, gnl\|monDom2\|scaffold_12 (47871762-47871538)
	30-240, gnl\|panTro1\|chr16 (63896599-63896823)
	30-240, gnl\|rheMac2\|chr7 (43815095-43815319)
	30-240, gnl\|rn3\|chr8 (69452261-69452036)

	372-744, gnl\|bosTau2\|chr10 (8716308-8715949)
	372-744, gnl\|Hg17\|chr15 (63408401-63407989)
	372-744, gnl\|Mm7\|chr9 (65214865-65215208)