Ss1.1-Pig4-TMW8063I10.5
               |  | GAGGCCTAGGCGAGCTGTGTTGACCCCAAAGACAGTTCTGCACAATAAACTCCATCTCAG
AATCCACCATAAAACCCAACCATTGATTTTTATACCTATCCAGTGGACAAATTCTGGAAA
AAAAAATGGATATCTGTTATTTTTGTCATCAGATGAAGCTAACAAAGTATGTTTTCATTT
TGGAAAAGAAAAAGAAAAATTACTAGCTTGGTTTTATTCTGGTCAAGATGCCCACATCTA
AGTATTCATATAGAAATGGCAGCATCTAAGCCACCTGGTGTGAGCTATTTCAAACCCCCT
TCTGGCCCACACCCTTCCTGCTGCTTTAGGTCTTGTTTCTGGTGTGTCTTCGACCAGGTT
GTCAGAAGGAACATTGTTGAGGCTGCCTGTGAAGCATAAGATGCAATCTGGGGGGACTGT
GAGGAGCCATTGATGATGATGTGTGCCCACATGGATGGGAGTAGATGAGCACAGAATGCC
CCAACATGTTGACCAATTCTCAAGCCTCCAGGGAGTCTCTTCTTCATCATGAGCAGGTGG
AACATGTGTGCTGGGGGAAAGCCAAATGGTATCTGCCACCCAGATTCCTTAGCGTAGAGT
CTTGAACTTTTTAGCAAATACCTTACCAGAGAATCTGTCTACTGGTTTCCTGCTGAGTTC
TTTTGGCTCTTCCAGATTTTGGCTTCATCCAGTGCCCATGTTCAGGGGTGCATGGAAACT
ATAGGGTTAGAAGCCATTGCTGCTGAGAACAAAGGATTCTGCTTGGGCCCCCCCACCCAG
TCTTAGGAAATAGTGACTTAGTCATCAATTATAGCAGAAACCATGAGTTATTCTCTCAAA
CCCACCCTCCCC | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | GAGGCCTAGGCGAGCTGTGTTGACCCCAAAGACAGTTCTGCACAATAAACTCCATCTCAG
AATCCACCATAAAACCCAACCATTGATTTTTATACCTATCCAGTGGACAAATTCTGGAAA
AAAAAATGGATATCTGTTATTTTTGTCATCAGATGAAGCTAACAAAGTATGTTTTCATTT
TGGAAAAGAAAAAGAAAAATTACTAGCTTGGTTTTATTCTGGTCAAGATGCCCACATCTA
AGTATTCATATAGAAATGGCAGCATCTAAGCCACCTGGTGTGAGCTATTTCAAACCCCCT
TCTGGCCCACACCCTTCCTGCTGCTTTAGGTCTTGTTTCTGGTGTGTCTTCGACCAGGTT
GTCAGAAGGAACATTGTTGAGGCTGCCTGTGAAGCATAAGATGCAATCTGGGGGGACTGT
GAGGAGCCATTGATGATGATGTGTGCCCACATGGATGGGAGTAGATGAGCACAGAATGCC
CCAACATGTTGACCAATTCTCAAGCCTCCAGGGAGTCTCTTCTTCATCATGAGCAGGTGG
AACATGTGTGCTGGGGGAAAGCCAAATGGTATCTGCCACCCAGATTCCTTAGCGTAGAGT
CTTGAACTTTTTAGCAAATACCTTACCAGAGAATCTGTCTACTGGTTTCCTGCTGAGTTC
TTTTGGCTCTTCCAGATTTTGGCTTCATCCAGTGCCCATGTTCAGGGGTGCATGGAAACT
ATAGGGTTAGAAGCCATTGCTGCTGAGAACAAAGGATTCTGCTTGGGCCCCCCCACCCAG
TCTTAGGAAATAGTGACTTAGTCATCAATTATAGCAGAAACCATGAGTTATTCTCTCAAA
CCCACCCTCCCC | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map