Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J19.3

Sequence:


               
               GAGAGGCCTGAATGGGGCCGTGGGGTCCAGAGCTTCGTGATGAACCCCTGTCTCCTGGGA
GCCGATTCCTCCCCTTTCTGGGGCTGCTCTCTGACCCCAGCCCCTTCCCCCCTCTGCTCC
CCTATGGGCAGAGTGGGGTCTGTTAGATGCGCTGGTCTGTGGGAGTGGCCGGAGGTGTTG
TGCCAGGTCCTCCAGCAGACAGAAGTACCCCTCCTCCCCGCCCCTTGCCCTGCCGTCTGC
CTCCAGACTGACAGAAGGCAGGGTCACCCCTGCTGAGAAGGATTAGAGAGGAGGCGGGGC
ACCCCAACTGCTGGGCCCTGGGCCACGGTTGGAGGTGGGGAGCGGGGAGCTGCCACTGTT
CCCCACCCCCAGCCCCCCACCTGTTCCAAGCCACCTTGGCCTTGGCTCCCGCAGCAGCAG
CAGCCCCACCTCCTTTGGTTACTGAGATGAAGCCGGGAGGCAGCCTTTAAGCCTGAAGAC
CCCTGCCCTGGGAGTCGGATGCCCTGGTTTGAGTCCAGCCCTGCTGCCCAGTTGCTGTGT
GTCCTTAGGGAGCCATCCTCCCCTCTCTGGGCCTTCGTTTGCTTGTCACCCTTGTGCGGT
GTGACCAAGGGGGACTTAAAACCCCTAGCCACTCTGAAGCACAGTGGACTGGGCTCTTCC
TCTCTTCTGTGCTGTGGACCCCCACACCGCCCTCTCCCCTCACTCACCTGGCCTGTGCAG
AAAGGCCAGGGCAGGAGAGGTTGGGGGAAAAGCCTTTTTTGTTGTTGCCAGTACCACCTC
TGCAAAGGTCAGGCTGTGTTCCCGCCCCGCCGGGCCGCCAGCCTGGTGCCTAACGTCTGC
CCAGCAGCAGATGACCGGCCCCGGGCTCCTAGCAACAGTGGACAAAAGGTTACTCTTGAC
GTGCCAGGCTGCCTCGCCCTCGAGCACCCCCCTCCTGAAAAGGGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGCCTGAATGGGGCCGTGGGGTCCAGAGCTTCGTGATGAACCCCTGTCTCCTGGGA
GCCGATTCCTCCCCTTTCTGGGGCTGCTCTCTGACCCCAGCCCCTTCCCCCCTCTGCTCC
CCTATGGGCAGAGTGGGGTCTGTTAGATGCGCTGGTCTGTGGGAGTGGCCGGAGGTGTTG
TGCCAGGTCCTCCAGCAGACAGAAGTACCCCTCCTCCCCGCCCCTTGCCCTGCCGTCTGC
CTCCAGACTGACAGAAGGCAGGGTCACCCCTGCTGAGAAGGATTAGAGAGGAGGCGGGGC
ACCCCAACTGCTGGGCCCTGGGCCACGGTTGGAGGTGGGGAGCGGGGAGCTGCCACTGTT
CCCCACCCCCAGCCCCCCACCTGTTCCAAGCCACCTTGGCCTTGGCTCCCGCAGCAGCAG
CAGCCCCACCTCCTTTGGTTACTGAGATGAAGCCGGGAGGCAGCCTTTAAGCCTGAAGAC
CCCTGCCCTGGGAGTCGGATGCCCTGGTTTGAGTCCAGCCCTGCTGCCCAGTTGCTGTGT
GTCCTTAGGGAGCCATCCTCCCCTCTCTGGGCCTTCGTTTGCTTGTCACCCTTGTGCGGT
GTGACCAAGGGGGACTTAAAACCCCTAGCCACTCTGAAGCACAGTGGACTGGGCTCTTCC
TCTCTTCTGTGCTGTGGACCCCCACACCGCCCTCTCCCCTCACTCACCTGGCCTGTGCAG
AAAGGCCAGGGCAGGAGAGGTTGGGGGAAAAGCCTTTTTTGTTGTTGCCAGTACCACCTC
TGCAAAGGTCAGGCTGTGTTCCCGCCCCGCCGGGCCGCCAGCCTGGTGCCTAACGTCTGC
CCAGCAGCAGATGACCGGCCCCGGGCTCCTAGCAACAGTGGACAAAAGGTTACTCTTGAC
GTGCCAGGCTGCCTCGCCCTCGAGCACCCCCCTCCTGAAAAGGGGGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               144-422, - strand, RNAz p=0.997264
               

               
               583-860, - strand, RNAz p=0.988558

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-422, - strand, RNAz p=0.997264
               

               
               583-860, - strand, RNAz p=0.988558

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               151-234, - strand, RNAmicro p=0.963105
               

               
               742-833, + strand, RNAmicro p=0.910398

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               151-234, - strand, RNAmicro p=0.963105
               

               
               742-833, + strand, RNAmicro p=0.910398

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               227-341, DA530743 FEBRA2 Homo sapiens cDNA clone FEBRA2023798 5', mRNA 
(dbj|DA530743.1|), blast E-value=1e-37, identity=93.04%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               227-341, DA530743 FEBRA2 Homo sapiens cDNA clone FEBRA2023798 5', mRNA 
(dbj|DA530743.1|), blast E-value=1e-37, identity=93.04%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-943, gnl|bosTau2|chr3 (60830922-60831814)
               

               
               1-943, gnl|Hg17|chr1 (54451939-54451073)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-943, gnl|bosTau2|chr3 (60830922-60831814)
               

               
               1-943, gnl|Hg17|chr1 (54451939-54451073)

	144-422, - strand, RNAz p=0.997264
	583-860, - strand, RNAz p=0.988558

	151-234, - strand, RNAmicro p=0.963105
	742-833, + strand, RNAmicro p=0.910398

	1-943, gnl\|bosTau2\|chr3 (60830922-60831814)
	1-943, gnl\|Hg17\|chr1 (54451939-54451073)