Non-Coding RNA Search

Ss1.1-Pig4-TMW8063L01.5

Sequence:


               
               GTCTCCTCTCATGGTGCCCCTTAATTTTCTCTCCCTGGGGTCCCCCCTCCCCATTTTCCA
CAGTAAATGAGATACACAGTAATGATGCCGCTAATGCAGAGAGTTGCGTTCTTCTGTCCA
CTTTGAGGCACGCTACTCTATCAGGCCTTTCTTGGCAGATAATCATGGTGTTTACTTTGG
ATTTAGCAAACGGCCCCCTGGCCCTTCTGTTGTCCCCACGAGGCGGCGCTATAACCAGGG
CGTTGGGAGCCGTCCACCCTGAGACGCTGGGCTGCAGCCACTTCTCAGCAGCGTCGAGGG
TCAGATGCAGCATCAGCTCTTTCTCGCCTCACTCCCCAGACAAGCTGGGCCAGGCTTCCG
GCCCCTTGGCAGCCAGACCCGGTGAAAGGCGTCTCCTTAGCCTCTAGCTTCTGGTCGGAA
GGACGCGGGAGCTGACCTGATCTGAGTTTGGCCTTTTCTTGGGGGGCTGTCGTCCAGAGC
CAGGTGGAGCGTGAGGCCACCAGGGGCGAGGAGTTGCTCATCAGTGGTCCTCTCTGGATG
CGCTGATCACACACTGGCTTTTCAGCCCGTTAGGATCCTCGCGGGGAGCTTCTGTGAGAG
TCAGGCCTTGCTGTCTTTCCCACATGGGCTCCCTTCTCTGCTGCGAGACTAAAGCTTAGG
GACCGTTCCTCAAAAGAGCCCCAAAAGAAAAATGTCCCCATGGAATTGTAGAAGCATTAT
TTTTGATATCTATTTAAATGTCAGATATTGTTTTCTGTATTTTTCTATTTAGAAATGTTT
TATAACAAAATCTCAAAACGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCTCTCATGGTGCCCCTTAATTTTCTCTCCCTGGGGTCCCCCCTCCCCATTTTCCA
CAGTAAATGAGATACACAGTAATGATGCCGCTAATGCAGAGAGTTGCGTTCTTCTGTCCA
CTTTGAGGCACGCTACTCTATCAGGCCTTTCTTGGCAGATAATCATGGTGTTTACTTTGG
ATTTAGCAAACGGCCCCCTGGCCCTTCTGTTGTCCCCACGAGGCGGCGCTATAACCAGGG
CGTTGGGAGCCGTCCACCCTGAGACGCTGGGCTGCAGCCACTTCTCAGCAGCGTCGAGGG
TCAGATGCAGCATCAGCTCTTTCTCGCCTCACTCCCCAGACAAGCTGGGCCAGGCTTCCG
GCCCCTTGGCAGCCAGACCCGGTGAAAGGCGTCTCCTTAGCCTCTAGCTTCTGGTCGGAA
GGACGCGGGAGCTGACCTGATCTGAGTTTGGCCTTTTCTTGGGGGGCTGTCGTCCAGAGC
CAGGTGGAGCGTGAGGCCACCAGGGGCGAGGAGTTGCTCATCAGTGGTCCTCTCTGGATG
CGCTGATCACACACTGGCTTTTCAGCCCGTTAGGATCCTCGCGGGGAGCTTCTGTGAGAG
TCAGGCCTTGCTGTCTTTCCCACATGGGCTCCCTTCTCTGCTGCGAGACTAAAGCTTAGG
GACCGTTCCTCAAAAGAGCCCCAAAAGAAAAATGTCCCCATGGAATTGTAGAAGCATTAT
TTTTGATATCTATTTAAATGTCAGATATTGTTTTCTGTATTTTTCTATTTAGAAATGTTT
TATAACAAAATCTCAAAACGTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               343-462, + strand, RNAz p=0.7017

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-462, + strand, RNAz p=0.7017

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-797, gnl|bosTau2|chr25 (34475707-34476495)
               

               
               9-797, gnl|Hg17|chr7 (98873856-98874618)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-797, gnl|bosTau2|chr25 (34475707-34476495)
               

               
               9-797, gnl|Hg17|chr7 (98873856-98874618)

	9-797, gnl\|bosTau2\|chr25 (34475707-34476495)
	9-797, gnl\|Hg17\|chr7 (98873856-98874618)