Non-Coding RNA Search

Ss1.1-Pig4-TMW8063N07.3

Sequence:


               
               GGCGGCTGCTCTACCTGGGAGAGGCCCAGTCAGCCCAGGAGGGAACGTACACCTGCGAGT
GCAGCAACGTGGCGGGAAATAGCAGCCAGGACCAGCAGCTGGAGGTGCATGTTCCTCCCC
AGATTGTGGGCCCCCGGGAACCCCACATACAGGTGTCCGTGGTCCAGGACGAGGAGGCCA
CTCTGGAATGCAACGCCACAGGGAAGCCCCTGCCCAGGGTGACCTGGGAGCGGGACGGCC
AGCTGGTGGGGGCTGAGCCTGGCCTGTGGCTGCAGGACCAGGGTCGGAGCCTGCACGTGG
AGCGGGCTCAGGCCACCCACGCCGGGCGCTACAGCTGCGTGGCCGAGAACGTAGCCGGGA
GGGCCGAGAGGAGGTTCGAGCTCTCCGTGCTGGTGCCCCCGGAGCTCATTGGAGACTTGG
ACCCACTGATCAATGTCACGGCTGCCTTGCACAGCCCTCTGACGCTGCTCTGTGAAGCCA
CAGGCATCCCACCCCCAGAAGTCCGTTGGTTCCGAGGCGAGGAGCCCATCAGCCCTGGGG
ACAACACCTACCTCTTGGCAGGTGGCTGGATGCTGAGGATGACCCGGGCACAGGAGCGAG
ACAGAGGCCTCTACTCGTGTCTGGCAAGCAACGAGGCCGGGGAGGTTCGACGGAATTACA
GCGTGGAGGTCCTGGGCCACCCACAGCCCAATGTCACATGGTTCAAGGACGGCCGGCCCC
TGGCTGGTGGAGACACCTACCGCATTTCTCCCGAGGGGGGCCTCCTGCAGGTCCTCCAGG
CCAACCTGTCCAACGCAGGCCACTACTCCTGCATTGCCGCCAACGCCATAGGGGAGAAGA
CCAAACACTTCCAGCTCAGCGTGCTGGTGGTTCCCACCATCCTGGGGGCGGCCGAGGACA
GTGCGGATGAGGAGGTGACAGTGACCGTCAACAACCCCATCTCTCTGATCTGCGAGGCCC
TGGCCTTTCCCTCCCCCACCATCACCTGGATGAAGGATGGGGCCCCCTTTGAGGCCTCGA
ACAACATCCAGCTGCTCCCAGCAGGCACCCACGGGCTGCAGATCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTGCTCTACCTGGGAGAGGCCCAGTCAGCCCAGGAGGGAACGTACACCTGCGAGT
GCAGCAACGTGGCGGGAAATAGCAGCCAGGACCAGCAGCTGGAGGTGCATGTTCCTCCCC
AGATTGTGGGCCCCCGGGAACCCCACATACAGGTGTCCGTGGTCCAGGACGAGGAGGCCA
CTCTGGAATGCAACGCCACAGGGAAGCCCCTGCCCAGGGTGACCTGGGAGCGGGACGGCC
AGCTGGTGGGGGCTGAGCCTGGCCTGTGGCTGCAGGACCAGGGTCGGAGCCTGCACGTGG
AGCGGGCTCAGGCCACCCACGCCGGGCGCTACAGCTGCGTGGCCGAGAACGTAGCCGGGA
GGGCCGAGAGGAGGTTCGAGCTCTCCGTGCTGGTGCCCCCGGAGCTCATTGGAGACTTGG
ACCCACTGATCAATGTCACGGCTGCCTTGCACAGCCCTCTGACGCTGCTCTGTGAAGCCA
CAGGCATCCCACCCCCAGAAGTCCGTTGGTTCCGAGGCGAGGAGCCCATCAGCCCTGGGG
ACAACACCTACCTCTTGGCAGGTGGCTGGATGCTGAGGATGACCCGGGCACAGGAGCGAG
ACAGAGGCCTCTACTCGTGTCTGGCAAGCAACGAGGCCGGGGAGGTTCGACGGAATTACA
GCGTGGAGGTCCTGGGCCACCCACAGCCCAATGTCACATGGTTCAAGGACGGCCGGCCCC
TGGCTGGTGGAGACACCTACCGCATTTCTCCCGAGGGGGGCCTCCTGCAGGTCCTCCAGG
CCAACCTGTCCAACGCAGGCCACTACTCCTGCATTGCCGCCAACGCCATAGGGGAGAAGA
CCAAACACTTCCAGCTCAGCGTGCTGGTGGTTCCCACCATCCTGGGGGCGGCCGAGGACA
GTGCGGATGAGGAGGTGACAGTGACCGTCAACAACCCCATCTCTCTGATCTGCGAGGCCC
TGGCCTTTCCCTCCCCCACCATCACCTGGATGAAGGATGGGGCCCCCTTTGAGGCCTCGA
ACAACATCCAGCTGCTCCCAGCAGGCACCCACGGGCTGCAGATCCTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               277-395, + strand, RNAz p=0.523007

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-395, + strand, RNAz p=0.523007

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-395, gnl|bosTau2|chr11 (80933048-80933333)
               

               
               111-395, gnl|Hg17|chr9 (130274510-130274795)
               

               
               111-395, gnl|Mm7|chr2 (31407329-31407614)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-395, gnl|bosTau2|chr11 (80933048-80933333)
               

               
               111-395, gnl|Hg17|chr9 (130274510-130274795)
               

               
               111-395, gnl|Mm7|chr2 (31407329-31407614)

	111-395, gnl\|bosTau2\|chr11 (80933048-80933333)
	111-395, gnl\|Hg17\|chr9 (130274510-130274795)
	111-395, gnl\|Mm7\|chr2 (31407329-31407614)