Non-Coding RNA Search

Ss1.1-Pig4-TMW8063N10.3

Sequence:


               
               GGGAATGGAGTTGCATATAAGGCTCAGATGAGAAAGGACCTGCTTCTGGGTTCACATGAT
TGCTGGTGGTAGAATTCGGTTCTTCAGGGTTCCTAGCTGGCTGTTAGCCTGAGGCCACCA
TCAATTCCTTATTACTTGGGCCTCTCCAACATAGCAGCTTGCAAGACAAGAAAGCCCTAG
AGAGTCTACTGCTAAGATGGAAGTCACAGTGTTTTGTCACTTTGTCATAGAAGTGACATT
CTGTCCCTTTCGCCACAGTCTGATTGTTAGAAGCAAGTCACTAGACCAGTCCACACTTAA
GGGGATGGCTTGACTACACAAGAGTGTGAATTCAGGAAGTAAGGATCACAGGAGATCATT
TCAGAAGTCTGCCTGCCAGAGGAACTACACTTTTTTCCTTCCAACCAATGAGCCACCAGT
TCACGTACCCACCAATTCAGCTGTTTCTCATGGAACTGAAATGCCACCTTTGTCATATAT
TAAACCTCATATGTATTTCTGTCTGTCTGGATACTCCTGTTATATATCTTTTCTGTCACT
TTCCATGCTGCTATCATATTGTTTTAATTACTGATCTCAGTAGTACAGGTTCCATTCCAT
TAATTTTATCCTCCTCCCCCTTAAAAAATTTTTGGCTGTTTACTTAACATTTATGGATTT
CGAAATACCTGTTTATAGTTTCATAAAATAACTCAGTTGGTATTTGACTGAAATTGTATT
ACTTGTATAGATTTAGTATTGGAGGAAATATATGTACAATACTGGTTCATCTCATCTATT
TTTAGTCTTTCATGATATTCAGGCAATTTTTATAGGTTTTTTCATATAAATTGTAAACAT
TTCTTACGAATTGTATTATCTGCATTAGTTTTTTGTTATGAAAGATATCTTATTTTCATA
ATTATTACTGATACTTTGCCTCAAATTTTTTCTATACTTGTCTTTTATATGGCCACATAT
TGAATTTTCATACTCATTTTAGTATTTTTTAGTTTTTTAATATTTAGGGGGTATATAATT
ATAATCTTAGACAAATAAGTATAATTCTGGTATTCCTTTCCAACATTTTTCATCAGATCC
TTTTCATCTTACTGGACTGACTCCAGAATAGTGTTCTTCCCAATTTTAGTCTGGACGAGT
GTTCTTCAGTACTGGACAAGACCAATAACTAAAATTACCTAAAAGGCCGTCAAAGATTTA
TTTGCACAAAAGCAGCAAGTCCAGTTGGTTTTACTGCCTGTTTCCAAGAAATCAATTTAT
ATAAGTTGATTGCTGATAGTTTCTGATAAATTCTTAGCTCTGGCTTACTAAACTTTTATC
AGAATATATAGTTAATCAAAAAAATAAATAACTGGAGTTCCCGTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATGGAGTTGCATATAAGGCTCAGATGAGAAAGGACCTGCTTCTGGGTTCACATGAT
TGCTGGTGGTAGAATTCGGTTCTTCAGGGTTCCTAGCTGGCTGTTAGCCTGAGGCCACCA
TCAATTCCTTATTACTTGGGCCTCTCCAACATAGCAGCTTGCAAGACAAGAAAGCCCTAG
AGAGTCTACTGCTAAGATGGAAGTCACAGTGTTTTGTCACTTTGTCATAGAAGTGACATT
CTGTCCCTTTCGCCACAGTCTGATTGTTAGAAGCAAGTCACTAGACCAGTCCACACTTAA
GGGGATGGCTTGACTACACAAGAGTGTGAATTCAGGAAGTAAGGATCACAGGAGATCATT
TCAGAAGTCTGCCTGCCAGAGGAACTACACTTTTTTCCTTCCAACCAATGAGCCACCAGT
TCACGTACCCACCAATTCAGCTGTTTCTCATGGAACTGAAATGCCACCTTTGTCATATAT
TAAACCTCATATGTATTTCTGTCTGTCTGGATACTCCTGTTATATATCTTTTCTGTCACT
TTCCATGCTGCTATCATATTGTTTTAATTACTGATCTCAGTAGTACAGGTTCCATTCCAT
TAATTTTATCCTCCTCCCCCTTAAAAAATTTTTGGCTGTTTACTTAACATTTATGGATTT
CGAAATACCTGTTTATAGTTTCATAAAATAACTCAGTTGGTATTTGACTGAAATTGTATT
ACTTGTATAGATTTAGTATTGGAGGAAATATATGTACAATACTGGTTCATCTCATCTATT
TTTAGTCTTTCATGATATTCAGGCAATTTTTATAGGTTTTTTCATATAAATTGTAAACAT
TTCTTACGAATTGTATTATCTGCATTAGTTTTTTGTTATGAAAGATATCTTATTTTCATA
ATTATTACTGATACTTTGCCTCAAATTTTTTCTATACTTGTCTTTTATATGGCCACATAT
TGAATTTTCATACTCATTTTAGTATTTTTTAGTTTTTTAATATTTAGGGGGTATATAATT
ATAATCTTAGACAAATAAGTATAATTCTGGTATTCCTTTCCAACATTTTTCATCAGATCC
TTTTCATCTTACTGGACTGACTCCAGAATAGTGTTCTTCCCAATTTTAGTCTGGACGAGT
GTTCTTCAGTACTGGACAAGACCAATAACTAAAATTACCTAAAAGGCCGTCAAAGATTTA
TTTGCACAAAAGCAGCAAGTCCAGTTGGTTTTACTGCCTGTTTCCAAGAAATCAATTTAT
ATAAGTTGATTGCTGATAGTTTCTGATAAATTCTTAGCTCTGGCTTACTAAACTTTTATC
AGAATATATAGTTAATCAAAAAAATAAATAACTGGAGTTCCCGTCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1045-1163, - strand, RNAz p=0.823314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1045-1163, - strand, RNAz p=0.823314

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               160-575, gnl|bosTau2|chr16 (53246790-53246376)
               


               
               898-1343, gnl|bosTau2|chr16 (53246377-53245957)
               

               
               898-1343, gnl|Hg17|chr1 (208916922-208917377)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-575, gnl|bosTau2|chr16 (53246790-53246376)
               


               
               898-1343, gnl|bosTau2|chr16 (53246377-53245957)
               

               
               898-1343, gnl|Hg17|chr1 (208916922-208917377)

	160-575, gnl\|bosTau2\|chr16 (53246790-53246376)

	898-1343, gnl\|bosTau2\|chr16 (53246377-53245957)
	898-1343, gnl\|Hg17\|chr1 (208916922-208917377)